Source:
XM_015780237.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
1467
Sequence:
GAGAUUGAGAUGACAAAGGAC
Length:
21
PHAS Gene Name:
LOC4326495
Chr:
Chr1
PHAS Transcript Annotation:
uncharacterized LOC4326495, transcript variant X2
PHAS Transcript Sequence:
CUCUAGUAUGUCUUGUCCAAACAGAUUCUAAUUUGGCAAAGAUGCAUUCCCCCGUCUAAAAAAAAACCCCCUCAAAUCAAGUCUUUUUUUAUGGAGGGUUGAAUUGUUCCAUUUAUCUUUCAUUUUUUUCAUUAAUUUUUUCAGAUGUAAUAUUGUACUCUAUGUUCAGGUAACAAGUUUCGUGUUUUUACAUAUAUAUCGAUGUACAACUAACAGUAUUAUAUAUGAUUAACCUAUUUUACUUGGGUGUUGCUUGUUAGUCUGCUGCUAACAUACAAAAGCAAUUAAAUGUGUAGUAACUGAAAAGGUGGUGAGUCAUGGGAUAGAGGAUAUGUGGCACACAAACUAUAUAGUAGCAUACAAAAUUAAUAAAGUAUUAACAUACAAAGCUUGUUAGCUAUCUGCUAACAUAUAAGAGUAAUAAAGUAGCAAGUACGUGGAGUAUAAGUUAUAUAGCUAGGACCACAAUAAACAUUACAUGAUCUAUACAUGGCAAUGCAUGUGAACCAUGCACUUACUGCAAGCGGCAAUCCAGAGUAUAUGCGUGGACAACCUUGGUAUUAGGUAGCUAAUUACCAAAAUAAGAUAGCUGCUUGCGUUACACAAUUUACAAAAGACAUGCUAGAAUUUAAAGUAAAAUACAAAGAGGUCUAGCAGGAAAGGAGCCGAAAGUUUGCUUAGUUUGCUAGCAAGGGAUCAAGUACUUAUCUACCAUUCCAUUGACCCAUGCAUAUGUUAAUUAGUAUUGGCUGGAAGCAAGCUAGUAUAUAUAGUAUUAGCAUGCCUUGACGAUGAACGCCUAUAUUAAAGUAAAUAAAAGCAAAACAAAUUCCUCCAUACAUCAUGCAUGCAUCUAGAGCUAACUGUCCAUCGAUCAUCUAGCUAGCUUAGAGAUAGAUCAGUAUGGCACGUCAAUUCAGCAUAAAGAUACAUCUGUAUGGUAUAUGAGAAGACAAACAUAUGGCUGUAUAUAUGGUUCAAUUAACAAGCAAAUCAAGAUAAAACAAAACUACAUUGCUUUAUUUUGGUUGUCUUUAGCAGAGAGUAGUGUGGAAUGCAAGGUUUGGCCUUGUGAGCCCCACAGAUAUUAAAGCUACCCGUUUCAUUGAAAAAGAUACACGCAAAUCAAACCCACAAGAAACUAAUAAACUUUUUUCUUUCUUCAAAUCUCUUUUGUUUUCCUUCUCAACAUUAUAGAUGUCUAGAGAAAUCUGACCCUUUUGGGCCUAUAUAAACCAUCCUACCUUGCCUAGCAUGUUCAUCCUCACAUCAUAUUGUGUUCAUCCUCAUACCACCAACCAAUUAGUGCCAGUAGCACAUUUCUGCAGUUGUAGUUCAAGUAAGGUAUAUCAUUCAGAGCAACAAAGGGAAGCAAUGAAGCAAACUUUGGAUGUACAUAGAUCGUUGAGGCCACCAAUGCCAAUGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGACCGACAAAAGGAGAUUGAGAUGACAAAGGACUUCAGUGAGCACAUGAUCCCUAUGGCCCGCUUGAAGAAGAUCGUAUCUUCUCAAAAGGGUAACAUGAUGAUGACCUUUGACAUGCCAGCGUUCUUAUCAAAGAUGUGUGAGCUCUUUGUACAAGAACUUGCUGCGCGUGCAUGGGCAUGUGCCCAAUCUCAUAACCGAUGCAUCAUACUAGACAUGGAUAUUGCUGAAGCCGUAGCCUCUACUGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCACAAUCACAGUGUGAAGCAAAAAUCCACUCCUUGUUCUUCCACCAAGCGUUGUAGGUUAGUUGAUCAACCUUCUACAUCUCACAUUCCCCACCAACAUCUGCUGCCACAGUUUGCUCCUACAUAUACUUUGGCCAUCCCUAUUACUCCUAGUUUAAUGCCAUUAAUUUCUCAAUGCACACCAUCCUCUUUUCCAUCCUUGCCACAAGAAAAGUUCCCAUUGAUGGCACCCACACCCAUUGUGAAUAGAUCAAUGUUGUUUAUCAAUAAUAUAGCAAGGGGUCUGGGCUUACAAGGAAACAAUAUCAAUGCAGUUGCCAACAAUAAUAUCCUAGACAAUAUUGUUGGUUGUAGUAGCCCUGCGGUUCUUGCAAGUAUGAUGAAUCCUGCUUUACUUGGGCCUUCAGGGGCACCACUAAAUCCUCCAAACUCCCAAUCCUACAACUGCACAAUGGAUAUAAUUAACUCCAAUGAUGCUUGUGGUUCCAAUAAUAGUAGCGUAAUUGUUGCAAAUCAAGCAAAUAUUGCUCCCUCUGGCCAUUUUUAUCCCAUUGCCCUUCAGUCCUCAUGCUCGACGUUCUUACAUAGUAACAACAAUGACACGAUUACUGCUAUACUGGAGGGUGUAGAUAUUAGCGACAUCAUGCAUGUUACAAGUGAUGUUGAUGCUGCUACAAAGGUUUUUAGUGGCCAAGAAGAACAACAUGAGAAAGAAACUAAUGUUGAGUGGCAUCAUCAAAAUGAGAUAUAUGAAAGUAUUGAUAUAAGAAUCAUCAAUGCUACUACUAGAGAUGGUAAUAAAUGUAGUAUUAGCUGGGAUGAAUUGGGAAUGGCCGAUGAUUCGUUGCUAGAUAAUUUUUUGGAGGAGCUUCAAGUAAGAAAGGAUGAUGUUUCGGACACCAGGAUUGCGUUCAACAAAGACCCAUUCCUUGAUGAUGCUGUCUUGUCAAAUCCAAGCACCAGUAAUGGCAACAAGUAAAUGAGGUGGCAAGUCUUAUUCAUCCCCUUUUGUAACAAUGAAGUUGUAACAUUCCUUCUUGUUUAAUAUACUGUCUUUUGUUUUGAGAGAAAUAAGAGAAUUAGAGAAUUUAUUAUAUGUUACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
259
NEP:
94.53%
LE_num:
LEP:
0.36%
ME_num:
MEP:
2.55%
HE_num:
HEP:
2.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosperm
Tau :
0.95
Avg Expression:
157.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -6.04703703666722 | 0.0137302749206387 |
2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -13.6522812477796 | 1.42205157940309e-11 |