Osa-phasi01g0431


Function Link


Basic Info

Source:

XM_015780237.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

1467

Sequence:

GAGAUUGAGAUGACAAAGGAC

Length:

21

PHAS Gene Name:

LOC4326495

Chr:

Chr1

PHAS Transcript Annotation:

uncharacterized LOC4326495, transcript variant X2

PHAS Transcript Sequence:

CUCUAGUAUGUCUUGUCCAAACAGAUUCUAAUUUGGCAAAGAUGCAUUCCCCCGUCUAAAAAAAAACCCCCUCAAAUCAAGUCUUUUUUUAUGGAGGGUUGAAUUGUUCCAUUUAUCUUUCAUUUUUUUCAUUAAUUUUUUCAGAUGUAAUAUUGUACUCUAUGUUCAGGUAACAAGUUUCGUGUUUUUACAUAUAUAUCGAUGUACAACUAACAGUAUUAUAUAUGAUUAACCUAUUUUACUUGGGUGUUGCUUGUUAGUCUGCUGCUAACAUACAAAAGCAAUUAAAUGUGUAGUAACUGAAAAGGUGGUGAGUCAUGGGAUAGAGGAUAUGUGGCACACAAACUAUAUAGUAGCAUACAAAAUUAAUAAAGUAUUAACAUACAAAGCUUGUUAGCUAUCUGCUAACAUAUAAGAGUAAUAAAGUAGCAAGUACGUGGAGUAUAAGUUAUAUAGCUAGGACCACAAUAAACAUUACAUGAUCUAUACAUGGCAAUGCAUGUGAACCAUGCACUUACUGCAAGCGGCAAUCCAGAGUAUAUGCGUGGACAACCUUGGUAUUAGGUAGCUAAUUACCAAAAUAAGAUAGCUGCUUGCGUUACACAAUUUACAAAAGACAUGCUAGAAUUUAAAGUAAAAUACAAAGAGGUCUAGCAGGAAAGGAGCCGAAAGUUUGCUUAGUUUGCUAGCAAGGGAUCAAGUACUUAUCUACCAUUCCAUUGACCCAUGCAUAUGUUAAUUAGUAUUGGCUGGAAGCAAGCUAGUAUAUAUAGUAUUAGCAUGCCUUGACGAUGAACGCCUAUAUUAAAGUAAAUAAAAGCAAAACAAAUUCCUCCAUACAUCAUGCAUGCAUCUAGAGCUAACUGUCCAUCGAUCAUCUAGCUAGCUUAGAGAUAGAUCAGUAUGGCACGUCAAUUCAGCAUAAAGAUACAUCUGUAUGGUAUAUGAGAAGACAAACAUAUGGCUGUAUAUAUGGUUCAAUUAACAAGCAAAUCAAGAUAAAACAAAACUACAUUGCUUUAUUUUGGUUGUCUUUAGCAGAGAGUAGUGUGGAAUGCAAGGUUUGGCCUUGUGAGCCCCACAGAUAUUAAAGCUACCCGUUUCAUUGAAAAAGAUACACGCAAAUCAAACCCACAAGAAACUAAUAAACUUUUUUCUUUCUUCAAAUCUCUUUUGUUUUCCUUCUCAACAUUAUAGAUGUCUAGAGAAAUCUGACCCUUUUGGGCCUAUAUAAACCAUCCUACCUUGCCUAGCAUGUUCAUCCUCACAUCAUAUUGUGUUCAUCCUCAUACCACCAACCAAUUAGUGCCAGUAGCACAUUUCUGCAGUUGUAGUUCAAGUAAGGUAUAUCAUUCAGAGCAACAAAGGGAAGCAAUGAAGCAAACUUUGGAUGUACAUAGAUCGUUGAGGCCACCAAUGCCAAUGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGACCGACAAAAGGAGAUUGAGAUGACAAAGGACUUCAGUGAGCACAUGAUCCCUAUGGCCCGCUUGAAGAAGAUCGUAUCUUCUCAAAAGGGUAACAUGAUGAUGACCUUUGACAUGCCAGCGUUCUUAUCAAAGAUGUGUGAGCUCUUUGUACAAGAACUUGCUGCGCGUGCAUGGGCAUGUGCCCAAUCUCAUAACCGAUGCAUCAUACUAGACAUGGAUAUUGCUGAAGCCGUAGCCUCUACUGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCACAAUCACAGUGUGAAGCAAAAAUCCACUCCUUGUUCUUCCACCAAGCGUUGUAGGUUAGUUGAUCAACCUUCUACAUCUCACAUUCCCCACCAACAUCUGCUGCCACAGUUUGCUCCUACAUAUACUUUGGCCAUCCCUAUUACUCCUAGUUUAAUGCCAUUAAUUUCUCAAUGCACACCAUCCUCUUUUCCAUCCUUGCCACAAGAAAAGUUCCCAUUGAUGGCACCCACACCCAUUGUGAAUAGAUCAAUGUUGUUUAUCAAUAAUAUAGCAAGGGGUCUGGGCUUACAAGGAAACAAUAUCAAUGCAGUUGCCAACAAUAAUAUCCUAGACAAUAUUGUUGGUUGUAGUAGCCCUGCGGUUCUUGCAAGUAUGAUGAAUCCUGCUUUACUUGGGCCUUCAGGGGCACCACUAAAUCCUCCAAACUCCCAAUCCUACAACUGCACAAUGGAUAUAAUUAACUCCAAUGAUGCUUGUGGUUCCAAUAAUAGUAGCGUAAUUGUUGCAAAUCAAGCAAAUAUUGCUCCCUCUGGCCAUUUUUAUCCCAUUGCCCUUCAGUCCUCAUGCUCGACGUUCUUACAUAGUAACAACAAUGACACGAUUACUGCUAUACUGGAGGGUGUAGAUAUUAGCGACAUCAUGCAUGUUACAAGUGAUGUUGAUGCUGCUACAAAGGUUUUUAGUGGCCAAGAAGAACAACAUGAGAAAGAAACUAAUGUUGAGUGGCAUCAUCAAAAUGAGAUAUAUGAAAGUAUUGAUAUAAGAAUCAUCAAUGCUACUACUAGAGAUGGUAAUAAAUGUAGUAUUAGCUGGGAUGAAUUGGGAAUGGCCGAUGAUUCGUUGCUAGAUAAUUUUUUGGAGGAGCUUCAAGUAAGAAAGGAUGAUGUUUCGGACACCAGGAUUGCGUUCAACAAAGACCCAUUCCUUGAUGAUGCUGUCUUGUCAAAUCCAAGCACCAGUAAUGGCAACAAGUAAAUGAGGUGGCAAGUCUUAUUCAUCCCCUUUUGUAACAAUGAAGUUGUAACAUUCCUUCUUGUUUAAUAUACUGUCUUUUGUUUUGAGAGAAAUAAGAGAAUUAGAGAAUUUAUUAUAUGUUACAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

259

NEP:

94.53%

LE_num:

1

LEP:

0.36%

ME_num:

7

MEP:

2.55%

HE_num:

7

HEP:

2.55%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosperm

Tau :

0.95

Avg Expression:

157.51


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA-6.047037036667220.0137302749206387
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA-13.65228124777961.42205157940309e-11