RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi01g0413

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XM_015780228.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

697

Sequence:

UGCAUCAUACUAGACAUGGAU

Length:

21

PHAS Gene Name:

LOC4326495

Chr:

Chr1

PHAS Transcript Annotation:

uncharacterized LOC4326495, transcript variant X1

PHAS Transcript Sequence:

UUAGCACUAGGAGCAUCGAUGAAUUGAGAAACUUCUCUAGCUUUGUCACCCAAGCGCUCAAUUUUUUUACUUACCCCUCAUCUCUUUUGUUUAUACUUAGCUUUCUGUGUUUCCCAUGGAUCUCCUUCUUCGUUGAUGGAUAUACUAUUGUGGUUGAUACUAGUGUUAUUAUUGCUUAUAGAUACAAUUGAUUAAUGCCAUACAUAAAAAAGACAAGAUGCGGGUGAAGAUCAGGUCGAAGACGCAGGAAUUUUACAGGAAUUUCAAAUGCGACGAUUUAAUUAUUGUACGGACCGGAACCAUGAAAAUUCAUGGGUUUCAAACAAGGUUCCAUCUACAUCAUCGUGCAUGCAUCGAGCCAAGGGCUAUAUCUACCUACAGCUAUGUAUAUCAUUCAGAGCAACAAAGGGAAGCAAUGAAGCAAACUUUGGAUGUACAUAGAUCGUUGAGGCCACCAAUGCCAAUGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGACCGACAAAAGGAGAUUGAGAUGACAAAGGACUUCAGUGAGCACAUGAUCCCUAUGGCCCGCUUGAAGAAGAUCGUAUCUUCUCAAAAGGGUAACAUGAUGAUGACCUUUGACAUGCCAGCGUUCUUAUCAAAGAUGUGUGAGCUCUUUGUACAAGAACUUGCUGCGCGUGCAUGGGCAUGUGCCCAAUCUCAUAACCGAUGCAUCAUACUAGACAUGGAUAUUGCUGAAGCCGUAGCCUCUACUGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCACAAUCACAGUGUGAAGCAAAAAUCCACUCCUUGUUCUUCCACCAAGCGUUGUAGGUUAGUUGAUCAACCUUCUACAUCUCACAUUCCCCACCAACAUCUGCUGCCACAGUUUGCUCCUACAUAUACUUUGGCCAUCCCUAUUACUCCUAGUUUAAUGCCAUUAAUUUCUCAAUGCACACCAUCCUCUUUUCCAUCCUUGCCACAAGAAAAGUUCCCAUUGAUGGCACCCACACCCAUUGUGAAUAGAUCAAUGUUGUUUAUCAAUAAUAUAGCAAGGGGUCUGGGCUUACAAGGAAACAAUAUCAAUGCAGUUGCCAACAAUAAUAUCCUAGACAAUAUUGUUGGUUGUAGUAGCCCUGCGGUUCUUGCAAGUAUGAUGAAUCCUGCUUUACUUGGGCCUUCAGGGGCACCACUAAAUCCUCCAAACUCCCAAUCCUACAACUGCACAAUGGAUAUAAUUAACUCCAAUGAUGCUUGUGGUUCCAAUAAUAGUAGCGUAAUUGUUGCAAAUCAAGCAAAUAUUGCUCCCUCUGGCCAUUUUUAUCCCAUUGCCCUUCAGUCCUCAUGCUCGACGUUCUUACAUAGUAACAACAAUGACACGAUUACUGCUAUACUGGAGGGUGUAGAUAUUAGCGACAUCAUGCAUGUUACAAGUGAUGUUGAUGCUGCUACAAAGGUUUUUAGUGGCCAAGAAGAACAACAUGAGAAAGAAACUAAUGUUGAGUGGCAUCAUCAAAAUGAGAUAUAUGAAAGUAUUGAUAUAAGAAUCAUCAAUGCUACUACUAGAGAUGGUAAUAAAUGUAGUAUUAGCUGGGAUGAAUUGGGAAUGGCCGAUGAUUCGUUGCUAGAUAAUUUUUUGGAGGAGCUUCAAGUAAGAAAGGAUGAUGUUUCGGACACCAGGAUUGCGUUCAACAAAGACCCAUUCCUUGAUGAUGCUGUCUUGUCAAAUCCAAGCACCAGUAAUGGCAACAAGUAAAUGAGGUGGCAAGUCUUAUUCAUCCCCUUUUGUAACAAUGAAGUUGUAACAUUCCUUCUUGUUUAAUAUACUGUCUUUUGUUUUGAGAGAAAUAAGAGAAUUAGAGAAUUUAUUAUAUGUUACAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

268

NEP:

97.81%

LE_num:

1

LEP:

0.36%

ME_num:

4

MEP:

1.46%

HE_num:

1

HEP:

0.36%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seed

Tau :

0.99

Avg Expression:

20.49

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA-7.728851961876430.0233363082956561
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA-8.911666471974440.00751553666667331