RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi01g0018

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XM_015766964.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

655

Sequence:

CAUGUCUAUUAUUCGGAGCAA

Length:

21

PHAS Gene Name:

LOC4326467

Chr:

Chr1

PHAS Transcript Annotation:

uncharacterized LOC4326467, transcript variant X1

PHAS Transcript Sequence:

CCUAUGGAUAGGUGAUCGGUAAGGAAGACGUUCCUCAUUAAAUUAUAGUAGAGAAGCUAUCUGAUUUAUGCACGAAAAUAGGAAAAAUAGUAAAUUUAUGUGCAUACUUAUAUUCGCAAACGAUUGAAAUAAAAUAUGCUUUGAAAAUGAAACAGGCGGAGCACAUGACAACUGGCAUAUCGUGCCAAACCGAACCCUCCAGAAAGAUGAAGUCCCAAAGCAUAGAAAGCACUAUAAAAGUCGACCCACAAUAUGCACUAGGAGCAAUCGAUGGAUUGAGUAGCUUCUCUAGCCUUGACCUCCUAGCGCUCAGUUGUUAUACUUACCCUCUAAGGGCUACUAGGCCUCACUCAUCUCUUCGUGUAUAUUUAGCCUUUUAUGCUACCCGUGGAUCUCUUUCGUCAUUGAUGGGUAUACCGUUUGUGGUUGAUACCAGUUUUAUAAUUAUCUACGGGCAAAGAUGAUAAAUGCCAUAUAUCGAAAUGACAAGAUUAGGGUGAAGAUUAGGCCGGGGACGCAGGAAUUUUACAGGAAUUUCACAUGUAAUAGUUCAACCAUAGUAGGAACUAGAAACAUGAAAAUUUGUGGGUUGCAAACAAAGUUCCAUCUACAUCAUCGUGCAUGUAUCGAGCCAAAGGCAGGAUCUACCUAUACCCAUGUCUAUUAUUCGGAGCAACAAAGGGAAGGAAUGGAGCAAACUUUGGACGUACCUAGAUCGUUGAGGCUACCGACACCAAAGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGAUCGACAAAAAGAGAUUGAGACAACAAAGGACUUUAGCGAGCAUGCGAUCCCUAUGGCCCGCUUGAAGAAGAUCGCAUCUUCUCAAAAGGGUAACAUGAUGAUGUCCUUUGACAUGCCAGCAUUCUUAUCGAAGAUGUGUGAGCUCUUCGUACAAGAACUUGCUGUGCGUGCAUGGGCAUCUGCUCAAUCCCAUAACCGUUGCAUCAUACUAGACACGGAUAUUGCUGAAGCCAUUGCCUCCACAGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCAUAAUCACCGUGAGAAGCACAAAUCCACUCCUUGUUCUACACUUACUACAAAGCGUUGUAGGUUAGUCGAUCAACCUUCCACAUCUCGCCCGCCCUACCAACAUCAGCUGCCACUGUUUGCUCCUACAUAUACUCCAGCCAUCCCUAUUACUCCUAGUUUAAUGCCACCAAUUUCUCACUAUAUACCGUUCCAAUAUCCAUCCUUAUCACAAGAAGUGUCCACGAUGAUGGCUUCCGCACCCAUAGUGAAUAGAUCAAUGUUGCUCAUUCACAACAUAGCAAGGGGUCUAGGCUUACAAGGAAACAAUAUCAGCACAUUCGCCAACAAUAAUAUCCCAGACAAUAUUAUUGGUUGUAGUAGCCCCGCGGUUCUUGCAAGUAUGAUGAGUCCUGCUUUACUAGACGUUGCAGGGGCAUCACUAAAUCCGCCAAACUCUCACUCCAUCUGCACGAUGAACAUGAUCAACUCGAGUGAUCCCAGUGGAUCUAGCAUUGGUGACAUUAAUGUUGCAAAUCAAGCAAGUCUUGCUCCCUCUGAACAUUUUAACCCUGCUAUCCUUCAAGAGUCCUCAUGUCCUUCGUUCUUAUAUAAUAACAACAAUGACACGAUUGUUGUUGUACCGGAGGGUGUAGAUAUUAGUGGCACCAUGGAUGUUGCUGGUUUAGUUAUCAAUGGUCAAGAAGAAGAACAUGAGAGGAAAACAAAUGUUGAGCAAAAUGAGAUAUAUGAAAGCAUUGAUAUAGGAAUAAUCAAUGCAAGUGUUGCGGAUGGUAAUAAAUGCAGUAUUAGGUGGGAUGAAUUAGGAACGGCCGAUGAUUCAUUGCUAGAUAAAUUUUUGGAGGAGUUUCAAGCAAGAAACGACGGUGUUUUGCACAGCGGGAUUGUGUUGCAUGAAGACCAUUCCUAGGUGACGUGAUUUUAGCAAACCCAAGUAGUAGCAAUGCCAAUAUAAGUAAUUGAGUUGGCAAGUUUUGUUUAUGUCUUUUGUAAGAAUGAGGUUGUAACUCUUUUUCUUGUUGAAUAUAAUGUUGUUUGUUUGGAGAGAAGAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

266

NEP:

97.08%

LE_num:

0

LEP:

0.0%

ME_num:

4

MEP:

1.46%

HE_num:

4

HEP:

1.46%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seed

Tau :

1.00

Avg Expression:

59.64

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi01g0018 is not a differential expression ncRNA.