Chr:
Chr4
Start:
17660213
End:
17660233
Strand:
+
Sequence:
AUCCAUCGUCCUCAUUUGGCU
Length:
21
precursor sequence:
CUGCUUCAUGCCAAGCUCGUUGGAAUGGGAGGCAUGUGGGACUUGCGAUCCACUAUGCAACUCUUCGUGAUCCAUCCAUCGUCCUCAUUUGGCUCUGUUCGUGCGUGAAGGACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
180
NEP:
65.69%
LE_num:
LEP:
7.66%
ME_num:
MEP:
10.22%
HE_num:
HEP:
16.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.91
Avg Expression:
36.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.38426162465952 | 1.43642314361385e-06 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.22926939383189 | 3.0462405629047e-05 |