OSA-PHAS9272672


Function Link


Basic Info

Chr:

Chr2

Start:

11894122

End:

11897997

Strand:

-

Ref_name:

LOC9272672

Sequence
(XR_003240914.1):

GCAGGCUGUGAAGAGGAUCAUCCGCUACGUUGCGGGGACUCUCGACCACGGUCUCUACUACCCGAGGUGUCCUGGCAAGGCACACUUCGUCGGGUACAGCGACAGCGACCACGCCGGCGACAUCGACACCAGCAAGAGCACGAGCGGGAUUCUCUUUUUCCUCGGCGAGUGCCUCGUUAGCUGGCAGUCAAUCAAGCAGCAGGUGGUGGCCCUGUCCAGCUGCGAGGCCGAGUACAUGGCAGCAUCCGCCGCUUCGACCCAGGCGCUCUGGCUUGCUCGACUGCUUAGUGAUCUCCUCGGCAGAGAUACUGGAGCGGUGGAGCUCAGGGUGGAUAGCAAGUCCGCUCUGGCCCUGGCAAAAAACCCCGUUUUUCACGAACGGAGCAAGCACAUCCGAGUGAGGUACCAUUUCAUCCGAAGCUACUUGGAGGAAGGGAGCAUCAAGGCGAGCUACAUCAACACCAAGGACCAGCUUGCGGAUUUGCUCACCAAACCCCUUGGGAGGAUCAAGUUCCUUGAGCUUUGCUCCCGGAUCGGGAUGGCUCAACUCUCCCACAAGACGGCGCACAAGACUUAGGGGGAGAAUGUAGGAAUAAGUCUUGGCUGGUUGGUCUUGGUCUUGUGGUGCCUUUUUCCUGCUUUUCAGCUUUCUAGGACAGCAUCUCUACUUUCAGUUUGGAUGCUCUAGGACAGUUAGGACAGCAGUUUGUUGAGAUGCUCUAGGACAGUUUGUUGGGAUGCUCUGCUCUAGGACAGUUUGUUGGGAUGCUGACAGCACCCUCUUAGACUAGCAUGGCUGCAUGGCUGCUACAAGCAGCUAUAAAUAUGUAUCCAAUCCUCUUUGGGAGGACAUGGCUUUUGUGUUUAGUGAAUGAAGAAAACCAGAAAAUUGCCCCAUCUCGAGUGCCAUCCUCUUCUCAAUGAGAGUAACCAUUGAAAUUCUAACAUUUAUCUCUUGAGUGGAAUAGUGGGGGUCCUGAGGAACUAGUACAAGAUUGUCAUGCGAAGGUGCUAGAUGCUCUUAAACCUCAUGGUGGGCUGGAGAUGCUAAGAAUUGUUAACUAUAAAGGCAGAGGUGCACCAACAUGGAUGAAAGAACUUAGUUUGUUUCAGCAACAUCUGACUGAGCUCCAUCUUGUUGGCUGUACAUUGUGUACCGACUUCCCUGAAUUUUCGCAUUUGAGGGCCCUUCAAAUUCUUCACUUGAUAAAGGUAGAUAAAUUACAGAGCAUGUGCAGCAAAAUGGCAUAUGUGGAAUUUCCAGCAUUAAAGAAACUCCAAUUACAUGAUUUAGAGAGCUUCGAGAGCUGGGUGGCAACACCAGGAAAAGAAGAGCUGUCCUUUCCAGUGCUUGAGGAGAUUGAUAUUAGGAACUGUCCGAAGUUGACGAGUCUGCCUGGACCACCAAAGGUCAAGGUUGUCAAGCUAAACGAAGACAUGGCACAGCUAUCCCUUUCCCUAAUCACAUCCACUAGAUACAUGUCGUCAUGUCUGUUUUAAAAUUGUCAGUUAGAGACAGUGAAACAACACUGGAGCUUGAUCAGAAUCAUGAAUUAUCAAUUUCAGUAAUCAAAAUUACAGGAUGCUGCUUUCUCUUCACCUCAAGUCCAUUGCAACCUGUGGUUGGGAUUUGGAAAUGGUUUGGACAACUUCAAAAAUUGAAAAUUAGUCGGUGCGAUGCUCUCAUCCACUGGCCAGAGGAAGAGUUCCUAAGCUUGAUAUCCUUGAAGGAAUUGAUCAUUGUUUUAUGCUCUAAUAUAAUUGGCCGUGCACAAGUGAAUGGAACGGCAACACAAGCAAGGGAUCAGCUCCUGCCACAGCUAACAAAACUAGAGAUAAGACAUUGCAAAAGCUUAACAUAGCUGUUCGUCCUUCCUCGAUCUAUAACAUACAUAUGUAUUAGAGGGUGUCCUAACUUCCAGUGCUUAUGGGGGAGGGGGACAGGUGAUACAGAGUCCGAUUAAUUUACAGGUGGAGCAUGGCAAUGACCUCACGCCCACAAGUGUCUCAGAGAAGCCAGGAAAUAACUAUUUACCUUGCCUAGAUACCCUAUUCAUAAUGGGUUCCGAUAAGUUGGCCAUGCUUCGAAAUCUGCCUCCAUCUCUCAAGAACUUGUCAAUUUAUCACUGUCCAGAGCUUCGCUCCAUAUCAGGGAAUUUGGAUCAACUCGUGGACGUGAGUAUUGGGGGCUGCAAUAAGUUGGACUCGCCUGAUUGGGGGAACCUACCUGCAUUAGAAGACUUUGGACUUUUGAAUUGCAAACGUCUGACAUCAUUACCUGGUAAUCUUGGGAAUUACUCUGCUCUCAGGAGGGUUCUCGUCAAAUACUGCCCAGCCAUAAAUAUGAAGCCUCUUUAUAAGCACCUACCAUGACUUGUCACAUGCUCACUCAAGCGAUCCUAUUGAAGGGCCUAAACUACGGGAUCCAAGAUCUUGGAAAUAUGCUAUUCCUGGGUGUCAAAAUUGGACGUAUCAGCGCCACCAGAAUUACUGAACACAGAUCCGGCCAGAAGCAGUGAAGCAUUGGCUCACGAACAAACGUUUUGGGAACCUCCUGCAUUAUAUUUUUGGCGGUUUUGCAUGGUCCGUUGCGAUGAAUGGAGGCCGCUGUGAGGGCUCAAGUGUUGACGAAAUAAAAUCCAUGAUUAAAAAAGAUAUGGGGAAGUUCCAGUUGAAAUGUUCCCCCUUUUUUUUUCCAUUCAGUGGAAGGAUGCUGGUUCGAAGCAAACACUCUUGUUGCCUGGUGCCGACAUAAUGUUGUCUUUUUGUUUACAUGAUAUUCUGGCACGAACUGGAGCUCUUGUAACAGUGUCGUCAUAUAGCCUUUGCUGAUCGUGUAGUAUUUUGCUUCUGUUUCUUAUUCAUAUCUGGUCGCCUGCUGCCAAAUGUAGGAGGUGCUUUCCUCUCAGAAAGGCCUCCAUCUCUUGUAAACUUGGUUAAAGUGCAGGAGACCCUUCUGGCUGGGUAAUAAUGUUUGACUGCAUAGCAUAUUCUUUAGAUUGGUUUUGCAAAACCACGGGAAAAUAUGUAGUGCAAACCACAUAUGUAGUGGAAACAUGGAUACCGUUGGAUCGAGAAAUGGACGUCCGAGAUUCGUCCACGUCACCAUGAGUUAAAAUUUAACUCCUAGUAAAAUUUCAACUCAUGAGUGAAUCUGCGAGUUAAAUUUUAACUCAGGGUGACGUGGACGAAUCUCGAACGUUUAUUUCUCGAUCCAAAGGUAGUUUCCAUGUUUUCACUAUAUAUUAUAUGUGGUUUGCAUUAGAUAUUUUCCCGACUAUAUAUCG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

13

LEP:

2.64%

ME_num:

477

MEP:

96.95%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.54

Avg Expression:

6.25

Tip: OSA-PHAS9272672 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.702465680931310.0316948656171813
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-2.160231919162710.00296355281101922
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.529856137603950.00716256932074163
4Nipponbare // panicle // AM--/--Nipponbare // panicle // PM2.198362320504070.00153986282216759
59L136 // leaf // control--/--9L136 // leaf // salt-1.059453704605370.00668546559246579