Chr:
Chr2
Start:
11894122
End:
11897997
Strand:
-
Ref_name:
LOC9272672
Sequence
(XR_003240914.1):
GCAGGCUGUGAAGAGGAUCAUCCGCUACGUUGCGGGGACUCUCGACCACGGUCUCUACUACCCGAGGUGUCCUGGCAAGGCACACUUCGUCGGGUACAGCGACAGCGACCACGCCGGCGACAUCGACACCAGCAAGAGCACGAGCGGGAUUCUCUUUUUCCUCGGCGAGUGCCUCGUUAGCUGGCAGUCAAUCAAGCAGCAGGUGGUGGCCCUGUCCAGCUGCGAGGCCGAGUACAUGGCAGCAUCCGCCGCUUCGACCCAGGCGCUCUGGCUUGCUCGACUGCUUAGUGAUCUCCUCGGCAGAGAUACUGGAGCGGUGGAGCUCAGGGUGGAUAGCAAGUCCGCUCUGGCCCUGGCAAAAAACCCCGUUUUUCACGAACGGAGCAAGCACAUCCGAGUGAGGUACCAUUUCAUCCGAAGCUACUUGGAGGAAGGGAGCAUCAAGGCGAGCUACAUCAACACCAAGGACCAGCUUGCGGAUUUGCUCACCAAACCCCUUGGGAGGAUCAAGUUCCUUGAGCUUUGCUCCCGGAUCGGGAUGGCUCAACUCUCCCACAAGACGGCGCACAAGACUUAGGGGGAGAAUGUAGGAAUAAGUCUUGGCUGGUUGGUCUUGGUCUUGUGGUGCCUUUUUCCUGCUUUUCAGCUUUCUAGGACAGCAUCUCUACUUUCAGUUUGGAUGCUCUAGGACAGUUAGGACAGCAGUUUGUUGAGAUGCUCUAGGACAGUUUGUUGGGAUGCUCUGCUCUAGGACAGUUUGUUGGGAUGCUGACAGCACCCUCUUAGACUAGCAUGGCUGCAUGGCUGCUACAAGCAGCUAUAAAUAUGUAUCCAAUCCUCUUUGGGAGGACAUGGCUUUUGUGUUUAGUGAAUGAAGAAAACCAGAAAAUUGCCCCAUCUCGAGUGCCAUCCUCUUCUCAAUGAGAGUAACCAUUGAAAUUCUAACAUUUAUCUCUUGAGUGGAAUAGUGGGGGUCCUGAGGAACUAGUACAAGAUUGUCAUGCGAAGGUGCUAGAUGCUCUUAAACCUCAUGGUGGGCUGGAGAUGCUAAGAAUUGUUAACUAUAAAGGCAGAGGUGCACCAACAUGGAUGAAAGAACUUAGUUUGUUUCAGCAACAUCUGACUGAGCUCCAUCUUGUUGGCUGUACAUUGUGUACCGACUUCCCUGAAUUUUCGCAUUUGAGGGCCCUUCAAAUUCUUCACUUGAUAAAGGUAGAUAAAUUACAGAGCAUGUGCAGCAAAAUGGCAUAUGUGGAAUUUCCAGCAUUAAAGAAACUCCAAUUACAUGAUUUAGAGAGCUUCGAGAGCUGGGUGGCAACACCAGGAAAAGAAGAGCUGUCCUUUCCAGUGCUUGAGGAGAUUGAUAUUAGGAACUGUCCGAAGUUGACGAGUCUGCCUGGACCACCAAAGGUCAAGGUUGUCAAGCUAAACGAAGACAUGGCACAGCUAUCCCUUUCCCUAAUCACAUCCACUAGAUACAUGUCGUCAUGUCUGUUUUAAAAUUGUCAGUUAGAGACAGUGAAACAACACUGGAGCUUGAUCAGAAUCAUGAAUUAUCAAUUUCAGUAAUCAAAAUUACAGGAUGCUGCUUUCUCUUCACCUCAAGUCCAUUGCAACCUGUGGUUGGGAUUUGGAAAUGGUUUGGACAACUUCAAAAAUUGAAAAUUAGUCGGUGCGAUGCUCUCAUCCACUGGCCAGAGGAAGAGUUCCUAAGCUUGAUAUCCUUGAAGGAAUUGAUCAUUGUUUUAUGCUCUAAUAUAAUUGGCCGUGCACAAGUGAAUGGAACGGCAACACAAGCAAGGGAUCAGCUCCUGCCACAGCUAACAAAACUAGAGAUAAGACAUUGCAAAAGCUUAACAUAGCUGUUCGUCCUUCCUCGAUCUAUAACAUACAUAUGUAUUAGAGGGUGUCCUAACUUCCAGUGCUUAUGGGGGAGGGGGACAGGUGAUACAGAGUCCGAUUAAUUUACAGGUGGAGCAUGGCAAUGACCUCACGCCCACAAGUGUCUCAGAGAAGCCAGGAAAUAACUAUUUACCUUGCCUAGAUACCCUAUUCAUAAUGGGUUCCGAUAAGUUGGCCAUGCUUCGAAAUCUGCCUCCAUCUCUCAAGAACUUGUCAAUUUAUCACUGUCCAGAGCUUCGCUCCAUAUCAGGGAAUUUGGAUCAACUCGUGGACGUGAGUAUUGGGGGCUGCAAUAAGUUGGACUCGCCUGAUUGGGGGAACCUACCUGCAUUAGAAGACUUUGGACUUUUGAAUUGCAAACGUCUGACAUCAUUACCUGGUAAUCUUGGGAAUUACUCUGCUCUCAGGAGGGUUCUCGUCAAAUACUGCCCAGCCAUAAAUAUGAAGCCUCUUUAUAAGCACCUACCAUGACUUGUCACAUGCUCACUCAAGCGAUCCUAUUGAAGGGCCUAAACUACGGGAUCCAAGAUCUUGGAAAUAUGCUAUUCCUGGGUGUCAAAAUUGGACGUAUCAGCGCCACCAGAAUUACUGAACACAGAUCCGGCCAGAAGCAGUGAAGCAUUGGCUCACGAACAAACGUUUUGGGAACCUCCUGCAUUAUAUUUUUGGCGGUUUUGCAUGGUCCGUUGCGAUGAAUGGAGGCCGCUGUGAGGGCUCAAGUGUUGACGAAAUAAAAUCCAUGAUUAAAAAAGAUAUGGGGAAGUUCCAGUUGAAAUGUUCCCCCUUUUUUUUUCCAUUCAGUGGAAGGAUGCUGGUUCGAAGCAAACACUCUUGUUGCCUGGUGCCGACAUAAUGUUGUCUUUUUGUUUACAUGAUAUUCUGGCACGAACUGGAGCUCUUGUAACAGUGUCGUCAUAUAGCCUUUGCUGAUCGUGUAGUAUUUUGCUUCUGUUUCUUAUUCAUAUCUGGUCGCCUGCUGCCAAAUGUAGGAGGUGCUUUCCUCUCAGAAAGGCCUCCAUCUCUUGUAAACUUGGUUAAAGUGCAGGAGACCCUUCUGGCUGGGUAAUAAUGUUUGACUGCAUAGCAUAUUCUUUAGAUUGGUUUUGCAAAACCACGGGAAAAUAUGUAGUGCAAACCACAUAUGUAGUGGAAACAUGGAUACCGUUGGAUCGAGAAAUGGACGUCCGAGAUUCGUCCACGUCACCAUGAGUUAAAAUUUAACUCCUAGUAAAAUUUCAACUCAUGAGUGAAUCUGCGAGUUAAAUUUUAACUCAGGGUGACGUGGACGAAUCUCGAACGUUUAUUUCUCGAUCCAAAGGUAGUUUCCAUGUUUUCACUAUAUAUUAUAUGUGGUUUGCAUUAGAUAUUUUCCCGACUAUAUAUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.64%
ME_num:
MEP:
96.95%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.54
Avg Expression:
6.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.70246568093131 | 0.0316948656171813 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.16023191916271 | 0.00296355281101922 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.52985613760395 | 0.00716256932074163 |
4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.19836232050407 | 0.00153986282216759 |
5 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.05945370460537 | 0.00668546559246579 |