Chr:
Chr6
Start:
19502833
End:
19506500
Strand:
-
Ref_name:
LOC9272602
Sequence
(XM_015786507.2):
CUCAACAGACCUGAUUAAGAGCUAGCAGCCAAUCUCUUCCCCUUCUCUUCGCUGGUGUCACUGUGUUUCUACUGCCUACCGGAGAUGAACAGUGGCGCUGGUGGUGCUGGGGGAGCAGCAGUAGGGAGGAUGCCGGCGGGGAGCCUCCAGUGGGCACAGUGGAGGCUAGCGGAUGAGCGAUGUGAACUCCGGGAGGAGGAGAUGGAGUACAUGCGACGGUUCCACCGCCACGAAAUCGGUAGCAACCAGUGCAACUCCUUCAUUGCGAAGCACGUUAGGGCGCCCCUCCAAAAUGUUUGGUCACUGGUGAGGAGGUUUGAUCAGCCACAAAUUUACAAACCUUUUGUGAGAAAGUGUGUAAUGCGCGGAAAUGUUGAGACCGGAAGUGUUAGGGAGAUCAUUGUUCAAAGUGGGCUCCCAGCCACAAGGAGCAUUGAAAGGUUAGAGUUCCUUGAUGAUAAUGAAUACAUCCUCCGUGUCAAGUUUAUUGGUGGCGAUCAUAUGUUGAAGACGGCCAACCAGGAACAGUUGUUAUUGAGUCAUUUGUGGUGGACAUUCCAGAAGAGAAUACCAAAGAAGACAUAUGCUAUUUCGUCAAGAACUUGCUCAGGUGUAACCUAAGGACCCUCGCUGAUGUGUCUGAGGAGAGCCUUGCCAGUCCUUGUUAAAACUCCAAGAAACAAUGGAGCUCCUUGAUCGGCGCUGAUUACUAAAGCUUCUUCUAAAGAAUUUAGUUAUCAGUACAAUCAUAGGGCUCACUUCAGUUUACUACAUAUACAUAUCCAACUUUCUGAUUUAGUUCGCUCUAGUGUUUGAAAAAUGUUAAACUGAAAUGAAUUUAUAAUAUUAUGAAGGAUUGUCGUCGGACUUCAUGUGCAUUCAUAUGUCUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.04%
ME_num:
MEP:
8.54%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
1.00
Avg Expression:
48.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.65504334078956 | 0.00375703833223137 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 3.72628955502859 | 0.00841809839202795 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 4.32131596948358 | 0.000809918553699026 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.96290096790067 | 0.00193009208140087 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 3.96448123370661 | 0.0059042373845239 |