Chr:
Chr4
Start:
28809061
End:
28814604
Strand:
+
Ref_name:
LOC9272515
Sequence
(XM_026024578.1):
UCCAAAGCCGCGAGGCACAGCUCGUGCUCCCGCCCCCUCUCCUCCCAAAAACGGAAGGGGCGAGCCCUCCUUUCCACCGCUCCCUUCUCUUUUUCCCUUCCGGGCAACGGCGCCCCGCCUCCACUCCUUGGCCGCUUGUGCUCGGAGGCAGAGCCGCUGACGCCGCAUCUGCACCUUGCUGCCCCACCUUGACCACGCCACGCAGUUGCUCCCGCGCCCCGCGUUCAAUUCGCACCGCCCGAUCCACCGCCCAAUGCAUCCGCGCCAUCCGCCAUUUCACGCCGCCCACGAAACCGCCGCACCGCCUUUGAGCGCCAGCCGAGCACCAUCUUCCUAUAAAAGCCCAACCCCCGCGCCCCCCUAUCUAUCCAUUUGGUCCCGUGCUCCUGGAAAUGAAGUGUCGUCGCCUCCUCGUCGCCGGCUGCCCCGCCACGACCAAGAACGCCACGCCGCCACCCAGUCCUUCCAUCCCCGCAUGCCUCCAUCUCCUCCCCGGCGCGCUCGCCUCGGCGUAAAGUUCGCCGCCAGGCGCCACCACUCGGCUGACGCAGUGCUGCCCCGUCGAGUCGCGUUCGCCGUCGCGAACACCAUCCUCCGCGGAGCCCGGCCGCCCUUCCCGCCGGCUUCCCGUCCUUCUCAUCAUCGAACCAUCGCCGCCGACGUCGUUCCCUCCCGUCGGUUUUUGAUUGUUUGCGCCUAGUUGCGGUUACCGGAUAUUUUUCUUCAAGUGGAAUUCUCGAAGAUUUGUGAAGCUUCGUGAAGACCCUGAGCAAGGCAAGCCACCUUUGAACAUCUUGAGCCUAUAUUUGAACUUAAUUAUAUUGCUUGAAAAAUAUUAUGCAUUGAUAGGAUUGCACUUAAUCUGCUUGCCCCGUCUGCGAGGCAGAUUGGCAAGUCUACCUAACUUGUUGCAUUUGAUCCUUCCAUUGUAAUUGUUAUAUCAUGUUCCCUUGUAACCAUCUAGUUGCGCCUCGAUAUUCGUGCACUCUGUGCGAGUAUCGACGGUCGCCUUCAAACUUAAAAUUUGAGUAACUUCUUGGGUAAAACUUGGUUUACAAAAGGAUUGGAAAACCCGACGCCUGAGUCAGUGCCUUGUGAAAGAAAAUGAGUUUUAAAAAUAAAACUCGCGACACAAGGCCAUUCCUAGGCGGAAUGCUUGUGUGGUAGCAUUUAAGGACCGAUUCCUUCGGAAUUACAUCCGAGCAUACAAUAGUGCGACCACACGGGUGGAAUGGGACACCCCUGGCUGAGUAAAUUGCUAAGCGGGGGAGCCUUGAUGCCGAGAGACAUGUGGAUUCAACAGGGUGGUGUUGGGGAGAACCCCCGGGCUUCCUGGCACAGUAUGGUCUGGGAUCUAACCUGUUGUUGGUCUGGGACCCCUCUCGUCGGCAUAUGGCAACCUUGUGUCGGCCUUCGAAAUGCCUUGUCAUGAAAGCCUUAAGGUCUCCAGAUGUGGCCGUUCUGCACGGGCUGAGUGAUCCGGGUUAGUAAUGUCGUGUGGGUAAAGUGUACCCCCUCUGCAGAGGUUAACAAACUGUUCGAACAGCCGUGCCCACGGUCAUGGGCGGAUGUGAGGUGAUUCCUUAGCGUAGUUUUUGUUUUACCCAGCUUUGUGAAAAUGUGUUAAGGUUCAGGAAACCUGAUGCUUGGAAAGCAUUUGGCUGUCCGGGUGACAGCGGGACUGGGAGUCCCUAGAAGUGAAUGGUCGUUUGGGGACCACUAUUAUCGGGAUGUUUGGAAAAAAAAAUUGGUUUGGUUUGGGAAACCAGCCUUGGAACCAACUCUGGGAGUUGUGUAAAUCUUGAUAAAAUUUUGGUCACUAGUCACCUCCCGACCGAGCUGAGACUUGUCUCGCUCUGGUCGCGGAGAGCACACACUUAGAUUAUUAAAAUGCUUGCAAACAAAACCGAUUGCAAAAUAACAGCCUUAUCUUUGAAGCUUGCAUUAACCACCUAAGUUCCCAUGGCUUGCUGAGUACUCCUGUACUCACCCUUGCUCUAUAUAAAUAUAUAGUUCUGCCAGCUCUGAAGAUGAAGUUGAAGUGAAGUAAAGAUUAGGAUUUCGUCCUAGUUCCCUGUUGUUGCCUAUGGUGUUGGGUGUUAGACCGUUGGUUCCGCUGCUGCCGCUGUUGUUGGUGUUUGCCUCGUCCGUGUCGUCGGUUGCAUUCUCGGGCUGUCUGAGCUGCAACCUAAGUUAAGGUAAAUAAGUCCUCUAUUUAUUUUAAGGAUUGCAAUGAUUCAUAUUUAUCACCGCGGGUACCAGCGCUACAUCCUGGGACUGGUACUGAGAUCGCGGUUUCGUAGGAAGCGGCUCGCGCUGUUUUUCCUACGACACGCUCAUAUCAGAUGCCGUUGUACGGCGGUGCCGGAUUGGGGUGUGACAUUAUAUACCACAAUUGCAAACAAGAUUUAUGAGUAGUAGUAUUAUAUUUGAAAAAAGAAGAUGAUUGUUGGUUGUCUCAGUAGCUUUUCCUCGUGCCACAACCAAGUAAUGUGUGCCUUGCUUGCUAGUGCCUAGUUGGAUGUUUUGGCUUGCAUUGGAACCAAUAGAUCGAGUAAUUAAGCAUGUGCUUAUGUCUUGCUGUAUGACUAAGCUCGGGCGCAUGCUUGUACUGGCCGGGCCUUGGCUCUGCCACUGGUCGAAGAAUCCGCCACGGCGUCUAAACCAUAACCUUGCUUUACCCCGCCUGCUCACCGCCCUCCUCCAUCCCUGUGGCUCUGGCGCCGCUGUCGGCGCCUCACCGUCAACCGUAGGGUCACCGCCUCCCACAACCAUCCUUCUAAGCCCAACAAUCUCCCCUUUCUUUCCCCUCUGUCCUCGCUCCUCUCACCCCCCAUCUCAACCUAGGACCAUAAUUCAUACAAUAGAGAUAGACACAUUUCUUUUCAGGGGAAAAAACGUCUCUUGAAAUAAAAAAAAUUAUGCACCUGCACAGCAGCACAAGCAAGCCAAAUUAAUUUGUGGACCAAUUUACUUCCUCCGUUCCCAUUUUUAGCUAUAAAUCUGGACAACUAUGUGCCCAGAUUCAUAAUCAAAAGUUGCUAUAUUUUGGGAUGGAGGCAGUAGGACUUUAUCAAUAACCAAAUUACUCACGACACUUUGCAUGUGCAAUUUUAGGUCAGGGGUAAAUAUAUUGGGGCCAUCAAUUAAUUUAUGGAGCCUGAAAUGGAACAGUUUAAAUCCAUGUUCAACCGCGGAAAGGCCACAGCCCCCUUCUUGGGUGAUUAGUAAGGUCGAAGGCAACGCGACUUUUCUAAUCCCCACACACCCGCCUGAAAAUAACGCGCGCGGGGCUGUGGCUGUGGUGUUAUUUGCUUGUUCGCUUCGGGAGCACCAGCUCAUCGCAAGCGACCGCCAUGGCUUUCCUCACGCUUCUCUCCCGCGCUCUGAUCUCGCCGCCGCCGCCGCCUCCUUAUAUAGCCGCGUUGCUCGUGUGUUUCUCGGCACGCGCUCAACCCACAGCUGCCACGAUCGAACACACGUGCGCUCAGAUCGAGCUGAUGAUACUAGCUAGCUAGCUAGCUAGCUAUAGCUAGAUAGGCAUGUCGUCGUCAACUAUAUAGGUGCGCCUAGCUUGCUAGCUGCUGCCCUAGCUGAAGCCGAUCGAUCAAAUGUCUGACCACGGGCCGCCGCCGCCGCGGUCGUCGGGGAAGCACCCCUUCUACCGAGGGAUCAGGAGCCGGAGCGGCAAGUGGGUGUCGGAGAUCCGGGAGCCGCGGAAGGCUCGCCGCAUCUGGCUCGGCACGUUCCCGACGGCCGAGAUGGCCGCCGUCGCCUACGACGUGGCGGCGCGCGCGCUGCGUGGGCCCGACGCGGCGCUCAACUUCCCCGAUCUGGCCGCCUCGCGCACCGCGCCACCCGCGUCCAGCUCAGCGGACGACAUCCGCGCAGCGGCUGCCGCCGCGGCCGCCUCGCUGCAGCACGACCGUGCCGGCGGCGGCAUUGCCCCUGCCGCCUCUGGAUCAGCGCACCAGCAGCGCGGCGGGAGCAGUGCCGCCGCGCGCACCACGGCGGGCAGCGGCGGCGCGCAGCAGGAAGGCAGCAGCGGCGCCGGCGCCGGGAGCCACCAGUAUUUCUUGGACGAGGAGGCCCUCUUCGAGACGCCGCAGUUCCUGCGGAACAUGGCCGCCGGGAUGAUGAUGAGCCCCCCGAGGCUCAGCCCCAGCUCCUCCGACGAUUCGCCGGACCCGUCGGAGGCCGGGGGCAGCCUCUGGAGCUACCGUGACCCAUAGAUAACAAUCCCUCCAUGCAUGGUAACGGCUGGCGAUGAACUGAGAUCGAUGACGGUAAUAAUUAAUUAACUACUACUCUUGAUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.94%
ME_num:
MEP:
15.65%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.86
Avg Expression:
3.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.66593489867383 | 2.96348103401941e-84 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.39365949673822 | 4.74907616825938e-94 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -8.41983844896866 | 4.42643134243544e-43 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.85192975517182 | 1.92973584618665e-38 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -8.67127857158111 | 7.49910617696059e-24 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -7.0968499753659 | 3.59367824316781e-48 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.77548696649663 | 1.62922368558279e-35 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.27080081607143 | 9.55799610588457e-19 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.78551399902274 | 0.0111449763114035 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.71606376910045 | 0.00270367775949134 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 4.22363295880333 | 0.0175882418942352 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.52061331978822 | 2.68262127573416e-57 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.328481574422 | 1.40731668080896e-17 |
| 14 | 9311 // leaf // control--/--9311 // leaf // salt | -3.08319869267846 | 3.51036062093637e-08 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.1520032988744 | 1.55322958212669e-87 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.87060845731964 | 2.30095599459188e-112 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.04301472676919 | 0.000616213917314179 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.73088257366186 | 2.90280509596933e-05 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 4.94642163491312 | 4.07873401904896e-15 |
| 20 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.14999017179783 | 0.000812807789022923 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.86300756205724 | 2.56274518913773e-79 |
| 22 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.1585285144053 | 1.69965461535647e-08 |
| 23 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.77932297780983 | 4.1592689404871e-05 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.74366437799946 | 2.08213267574852e-102 |