Chr:
Chr12
Start:
6984996
End:
6990079
Strand:
-
Ref_name:
LOC9272305
Sequence
(XM_015764496.2):
UCCAGCCCCACCUUCCAUCCAGAUCCAUCCAUCCCCACUCCCUCAGAAACCAUCGACGUUACCCCAAAAAUCGCCUCUGCUCCCUCCGCUCCCAGAAAUUGACGCCACCAAUUUCUUCCCCCUAUUCGGAUUCCGGUCAUGGAGAUGCUACUGCCACCACCGAUGAACUCCUCCUCCCAGUCGCGGCGAAUCAAGCGACCCCGAUGAAAAAUCGAGCUCCCCGGCGACGGAUCGACCUGCCACGAUGGCGGAUUGAGCGGCCUCACCUCUCCUCACCGGAUCCAGCCAGUGUCGUGGCCAUCUUCGAGCUCGAGCUGCAUGCCUCCGUGCGACAGCGGCGGUGGAUCGGACAAGGGUGACGCGGAUCUGUCGGCCUCCACCCCAGAUGAGCGAUUUUCCACUCUACCGGAUUGAGUGUAUAUUUGGCUUUGUCUUUUAUCUGACUGGAUUUCUCUUCUUUUUCUUCUUAAUUAGGAUUCAAUUGUUCUUACCAUAAAGAUGUUUUUAGGCCCGAUUUGGUUAGGUUUUGGGGGAAUUUUGGGUUAAACUCUAUCGGUUUUCUAUAGGAGAGACGGGGAUAGAUUCGGUCGGUUUCUUUAGGAGGGACGGACAGAGGAAGUGCGGAGGGCGGAGGGGAUCGUGAACAAAGGGGACGCUCCACCAAAAUGUCUUAAAAGAUCCCUCCAUUGUAAGUCAUUUUUACCAUUUCUAGAGAUAAAAUAUUUUAAUAAAAAAUGAAAAUAAAAAAAAUCCAAAGAAUUCCAUCGUAAAUCCACCUGCCGCUCUUUCUCUACUGGUAGAGAAUACCGAGCCCAUAAUUUCGUUUUAGCUAUCUGGGCCAUGAGAAAGCCCAUCUAGCCCAACUGGAACCGCACAAGAGGAUUAGGGUUUCGCUCUCUCAACCCACAUGCCCCCUAUUUAAAUAGCUCCUCCAAGCCGCCGUCAAUCCAUCGUCUCGCCUCCCCCGCACUGCUCCGCCUCCAUUGCUUCGCGUCUCGUAUUUGGAUCUUCCUUCUGUCCAUGGUGAAUCUUCCAUCGGUUCUUGCCUUGUCUGAUCUGUUUUUCCAUUUUUUGUGUUGUUUCAGUCAGUCAGGCAACUUGUUUAUGUGAUUUCUUUCGUUUGCCAUUGAGCCGAAACGAGUUGCUGAUCUGGGUAGAUUUUGGAUGUGUUGGGUUUCUUGUAGUAUUUGGAAUUGGUUGGUCCGAGUUGGGGUUGUAGGAAUCAUCAGGAAGAAAGCCAAUUUGCAGAGCAAAGGGGCCAGAUGCAGUGGCUAUCUUUGCAUUGAAGGUUGGCGACAACGAACAAACGCAGUUCUCCGUGCCGCUCAGAUUUUCUCUGUUUUGUGACGGCCUCGAACAAGCUGCUACAUCCACUUUCUUGAUUGUAUCUUUUGUUUUGAUUGGGUCUUGAUUUUGGGCUCAGAUUUAUGGCCAGAGCAAUCUUUUGUUUUGAUUGGGUCUUGAUUUUGGGCUCAGAUUUAUGGCCAGAGCAAUUUUGUCUUUUUUUUUUUGCUGAUUUAGGCUUUUGGAUUGUUUGAGAUUGGAUCUCACUUGCAAGAACCGCCGCUAUAUCUCUAUGAAGUACUUCGUUUGUUUUUUUGUUCGCAUUUUCAAAUCGACAACUGUUAAUUUAUAGUGAGAAAUAAAUUUAUAUCGUUUUGAAAACUCGUAAUUGGCGAUGUCGAACAAAAUGUAAAAUAGAGAUAACUACUGAAAUAAUCAACGCUCACCUCUCGAUUAAGACUCAGUUCGGUCAUAUUACCGCGGCAAGAAAUGGCCCGUUGAACCAACGAACGAAUGACCUUUCUAUUUAAUACAGGUUGGAACGACACGAGCAGAUGAGUCAACCUGGUAAAAUUAUGCGAAGUCAGGAUUAACUGAUGUCUAAUCUUCUUUAAAAGACAAUCUUCAAAAUCUUUUAUUCAACUGAUGUCUAAUCUUCUUUAAAGACAAUCUUCAAAAUUUUUUAUUCAAUGGGAUGCACAAUUCUAAAGAUGUAAAUUGAUUUGGUUUUAAAAGUUAGGGGACUUGUGCACGGGUGUACGAUUGAUGGAUGCGAAUGAAACUUAAGGGGACUUUUCCUCCAAAAAAUCGAGCAAGGAGCUUGUCAGAGUCGUGGCCCAUUACGCUGGGAGGCCCAUUUACAUAGCUCAGUAAGGGAGGAUCGUUUACGAAUGAAAUAAGUUCAUCCCAGGUCUCUUAACUUUAUACCGAAUCCGAUUUUCAUCCUUCAAUCCUAAAACCAGAUACGUCCCUAAACUGUCAAAACCAGUGCAAACGAGGUCCUUCAGCGGUUUGGAAAACGGUUUUGGUUGAUGUGGCUCCAACGUGGUUGGUUUGACUUGGUCUUUGUUCCAUUUGGCAUUUGAUAUGGCACUUAGAGCAUGCCCAACAGCUUCCUUUUUCAAUUCCCUAUCCUGUGAUUUAGGGAAUUUUGAUCAAGAAACAGAUCCAACAGAUUCUCUAACUAAUAUCCCAAUAUCUCUGGUUCCUCAGUCCGCAUAUAUCGUUCCUCACAAACAGGGAAGCGAUUUUGUUCCCAAUAUUUCCUCGUCGGUCUCUCUCGCGCGCAAAGCAGUCUCUCGCGCGCGCAAAGGGAAAAUGUUCCCGCGCACUUCUCCGCGCCCUCGCUCCUCAGCGGCGAAGCCUUCUCCGCGCCCUCGCUCCUCGGCGGCUACACCUUCUUCCUCGGUGGGGGCACCCUCUUCCUCGGCGGCGGCGUCCUCUUCAUCGGCGGCAGCUCCCUUUUCCCUUUUGCAAGGCACGGGGCGUGGUGUCCCGAUGACGGCCGGAGGUAUGCCGUUUCCGCGGUACGGCGAGUUCUGGCCCGGCGGCCAUCCGUGCCCUCCACCACCGCCUGGCGGCCAUCCGCGCCCCACACCGCCGCCCGGCGGCCAUGCGCGGCCCCCACCGCCGCCCGGCGGCCAUGCGCGCCCCCCACCGCCGCCCGCCGGCCAUGCGCGCCCUCCACAACGCUACUCCGGUUUUCAGGCAUCCGAGGCCAUGGAGAAGCUGACAUCUAGCGAGCCAUUGGAUCCCCUCUCACACGAAGCUUCUAUCGGCAGUUCCUCCAGAGUAUGGACUGUAGGUGACGAAGAAUUCCUCCACAUGAACAAUUUCGAUGAUAUGGAGCGAGAGCGAUAUUACACAAACUUGAUCAAUGAUGAGAGCAACCAUUUUGGCUCGAGUGAGAUGGGAAGCCAGUAUGAUGAUGAACAAGAACCAGUUGUGAAUGAAAAUGUUGCUGUGAGACCGAACCAAAAAAGAUCAAAAAAUUUCAGUUUGGAGGAGGACAAUCUUUUGGUGUCGGCGUGGAUAAAUGUUUCUUUCGAUCCGGUUCAAGGGACGGAUCAAUCUCACGGUACAUAUUGGGGACGUAUUCAUGACUACUUUCAUCAGAACAAGGAAUUCGAAUCAGAUCGCUCCCAAAGUUCACUUGUACAUCGUUGGUCCACUAUACAAGAACAUGUCAAUAAGUAUUGUGGUUUCUUAAGUCAGAUUCAGAAUCGAAAUCAGAGUGGUGUCAAUCAUGAGGACAUGCAUGUGCAAGCAAGCCUGAUGUACAAGAAGAAAGAGGAAAAGAAGUUUCAGUUCAUGCAUUGCUACAACAUUUUAAAGAAUCUGCCAAAGUGGGAUGAUAAGCGGAAUCAGCUGGCAGCUAGUAAAACUUCAAGCAAGAAGCAGAAGAAGACCGCCAAUGAUUCUCCUGCGAUAUCUACUCCUGCAUGUAAUGUUGAUGAGAAUAGGGCUGCUGAUCCUGAGAAUACAGUAGGUGAGGGAAGACCCAUGGGGAGGAAGAAGGCGAAACAACAGAUGCGCGAACGCUCGGAUCUAUCACGGAAAGAGUCCUUAGACUAUCUAUGGGAUAAGAAGAAAGAGGCCGAUGCGGAGAAGGAGCGAAAGUUUGAGGAGAGGUACCAAAUUGCUUUUGCACUUGAGCAAAAGCGGAUUGAUUUGGAGAGAGACAAGUUCGAGUUCAAGAGAAUGACAAAAGAAGAUAAGCUUUUGAGGACUGAUACUAGUGCAAUGAGCAUCGAGGAGCAGGAGUACUAUAAAAAUGUGAAGAAUCAAAUUCUAAGUCGUCGUUCAGCUCAAGCAUAAAUUAGUCUUAUUACUCAUCAAUUAGCAUUCAAAAUUUGUUAGAUCUUUAGCUAUAGAGUCUACUUAAUGGACUAGUAAAUUUUACUAUCUUGUUUUGGUACUGUUUUAUGUAGCCGGAGCAUUUGCUACUACUACAAAAUUGCUGGAAAUUGUUUUUUUGUUCAAAAUUGCUGGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.27%
ME_num:
MEP:
50.81%
HE_num:
HEP:
44.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.74
Avg Expression:
56.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.05093686288871 | 1.50678810419361e-06 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.69178019622824 | 0.00145990364641628 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.17883273423219 | 3.55053329612234e-08 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -3.76263803745545 | 7.62769515196967e-05 |
| 5 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.17385890302256 | 7.90697063281359e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.19490486738501 | 9.08988224702309e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.08072369832211 | 1.05810128993203e-07 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.04410352110383 | 1.88861586415445e-06 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.07101380130602 | 0.00103469471732177 |
| 10 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.04419117679008 | 2.02832832069569e-06 |
| 11 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.04428506846186 | 1.91043773598929e-06 |