Chr:
Chr6
Start:
12655545
End:
12660394
Strand:
-
Ref_name:
LOC9271748
Sequence
(XR_001546521.2):
CAUUGCGACACCACCAAUCUUAUUCUACAUAUUUCUAUCUUAUAUAGAACAACUAGCAUAGCUCUCGUUGCCCAGCCAGGUUGCCCAGCCAGGUUGCCUGGUGCACAAUGAGAGCUGGCUAGGGCGGACUCAUUCUGCUGUUGGUGCCCAACGAUGCUAGCUGCUACUCAUACUAGUGAAGCCUGCCAUGGUUCUGAGAAAUUUUUGGAUACUCCGCUGCGUAGAUAUGCACUAAAAGCUUGUAUGUUUCGCUGACUACAUACUAUGGAUAUCACCUGUUUGACAAGAGAAGGAUUACAUACCACGAUGAAGAUGAAUUGGAACAUGAUGCAAGUGAUGUAGCGCCCCAUAUAGGAGUCACUCAGGAAAGCACAGAAGAGGGAGAAGAUGUAGACGGUGCCCAUCCACAUGCUGACGCUAUUGGCGGCCUCGGCGUUCUCCUGGUGGAGCACCUGCCUGAGGAACACCACCAGGCCCACGGCGACGCCAAAAAAUGCAAAGUUGGCCAACACAUAGCUCACUGCAUCGUCAAGUAGAGCUGCUUAAUCACUGAGGUAUAUACAUUUAGUUCGCCUUCUUCAGCGUUGCCAUGGACCUGGUGAUGUUCUUCCGGCGGGUGCCCCACCAAGAGAACGCCGUGGCCACCAACAACAUCAGCAUAUGGAUGGGCACCAUCUUCAUCUUUGCCCUCUUUAGUGCUUUCCGUAGUGAUUCCUAUACGGGGUGCUACUUCACUUGGAUCAUGUUACAAUUUAUCUUCAUCGUGAUAUAUGCUCCUUCUGUUCUCACAUAGGUGAUAUCUUAAAAUGUAUGAGGCAUAUAUACUUUCUACCUAAUAUUAUAAAGUAUAUGCCUCUAUAUAGAUCAAAUAAAGCAGAAAAGUCAUUGUUAUUACCAAUCGUGUACUUUUGUUCUAAACAUCUCAACUAGUUUAAAGUAUUUGUCUCUCUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.84%
ME_num:
MEP:
8.74%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
1.00
Avg Expression:
728.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.3484065534632 | 1.41800133066713e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.35999036834522 | 0.00099561624357517 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.6029498725129 | 0.000263821618492443 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.76963215525704 | 0.000167532508778447 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.16108826706964 | 2.08551505241383e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.72495732984335 | 0.00410777511276779 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.24573752087505 | 0.00421829681503301 |