OSA-PHAS9271580


Function Link


Basic Info

Chr:

Chr3

Start:

7798567

End:

7801804

Strand:

+

Ref_name:

LOC9271580

Sequence
(XR_001544235.2):

GUUUUGUUCCUUUCAAAUGUCCAGGCUACCAAGAUGACAAUGGUGUCAAAGCAUCUCCUAUUUGCUUUGUCAACCUUCUUCCUAGCGUCGCACCACCACUCAAUGAAGCAAGCAUUGUUGGAGGGGAAGUAAAGGGGCUGUCAAAUGGUGUGGAGCUUGGAUUUGGGGCAGUCGAGAAGGAUGUGGUCGAUGGUUUCUUUUUGUUAGUCACAGAAGACGUAGGAGGUAGGGUGUGACAGCCCUCUUGUGCUCAGCAUGUUCGCCAUCCAGCAGCGUCGGUAUGCCACAAGCUAGGUGAAGUAUUUGCACUUUGAUUGUGCCGAGCUCUUAAUACUAGCUAUUAGUAGCUGUAGAAGAUUUUCAAAAUGUCUUCUACCUACUAUUCCAUCUAUCCAAACCAUUAUUAUUUGGAUUAAGAUAGCAAGUAAAAUUAAAUGGAGGGUUGAAGAAGUUUGAAGUUGUCAUAUUUUCUAUCACAAAUUUUAAACGCUGUAAGUAAUAAAAUUAUUGGUAGCUAUCCCAUUUCUUUCAAAAUGCCCCCGGCAACCGGCGCUUAUGCCUGUCGCCGUCUACUCCGACGGCCGCCUCGUCGCCGCCAUGGUCCGAUCCCUAGCAGGCACCGCCUCUCCCCUCCCUCGAGCUACAUGUUGCCACCACCUCACAAGAAAAAGGACAAUAUAUACCACUCCAUUCGUUGGGUUUCGAUAAAAUGCCAUCCACUACGAUGCAAAAGAUAAAAUGCCACUCAGUAGGUUAUCUUCGGUAUAUUUUUGCCGCUUUGAGAAGGCUUAAGACUAAAAUACCCCUGUUGUGGAGAGAGAGGAAGUGAGAUAGAAGCCGGACGGCGGCCGUGGUCGCCGGUGGCGAGCACGCGUGGGGCGGGCGGUGGAAGCCUGACGGCAGUGGAGAAAGAGGAAGAGAGAAGGGAGCCGGACGACGGCAGUGGUCGCUAGCGGCGAGUGCGCGGGGAGGGGGAGGGACGGUGGAGAGAGAGGAAAGGAGAGGGGAGCCGGACGGCGGCCGUAGUUGCCGGCGGCGAGUACACGGGAAGGUGGGGGAGGGGCAGUGGAGAGAGAGAGAGAGGAAGGGAGGGGGUGCCGUACGGCGGCUGUGGUCGCCGGCGGUGGUCGCGGGGGCAAGGGCAGGGGCGGGCGGCGAGGACAAUGAUGGACGACGGGGAAGAUAGCGACAGGCGCCCGCCGCUUGCCGCUUACUGGCGUCGCGCGCGCGCAUGCACAUGUCCUCCUCCCCUCGUAGCCGCUCGCCGGAGCAGUCCUCCCCUCGUCGCGCACUCGUCGCCGGCGACCACAGCUGCUGUCCGGCUCCCCUCUUCCUUCCUCUUUCUCCCCACAGCAGGGUUAUUUUAGUUUUAAGUCUUCUCGAAGUGGUAAAAUAUCCCCAAGAUAACCUACUGUCAUUUUAUUCUUUACAUCGUAGUGGAUGACAUUUUAUCUAAACCCAGCGAAUAGAGUGGCAUAUUAUCCUUUUUCUCCCACCUCACUGCCUCCCGUAUCCCGAAUCCUACUACCAUCCUCCUUUUCGUCCUAUCCUCUCCCAGACCAUGGGGAUGGAAGCGCCAGAUCUACCGGCCCCUCCGAGGUACGCGCCACUCGUCAAACUCCCCUUUUCUUUUUCCAGUACCCCAAGAUCUGUCACCACCGCCUGCCGCCAAGUUCUAAACAAUGCAGGAUUGAGGUGGAGAACUGCUUCUCCCUCUCUGAAAAUACAGGGUCCAUGGUGGACAUGAUCAAUGUCGCGGCACGAUGUGCCUUUUUACUUUGUGCAAGUGAGAUUUCAUAUGAUGUUGGAGAACGCUACAAUUUCGCGAGCAUUCUGCUUCAUUUCAGAUACACCUGUUGCUCACUGCACAAACUCCUGGACUCGGAUAAAUGACAUCAUCUAUUAUCAACAAGGGAUAACUCUUCUGUAGUAGGAUAUGGAUAUCCAUGUGAGGUCAUCAGAGUAGCAAGUUGAUGGAUCAUCGCCAUGAUGCUAUUGCUGCAUACGGAAGAUGACCUGAUUUAUCUAUAAAUGAUGCAGUGGUGCUGAUGACCAAUGCCAUCUCUGCAUCAGUCAGGUCCAAGUGAAAGCGAAAAAAAGGCUUUUCAGAAGACAAGAUCAAGUGACUGGACGGUCACAAUGAGAGCAAACUCGGGACUUAUCUUUGCCGUGAUGAUCCUGAUAAUGUGUGGCGCAUCUGCAGCUUCCAGUGACAAUGAUGAGCUGGUGGCACCGUUCGACACAUCCAAUGGCCUGAGAACGCUGUGAACGGCCACUUGGGCUGCUACCCCGGGUGCUUCAGAGACUGUGUUACAAGGAUGCCUGAAUGCUGUUCUGUGAGGAAAUUUGCUGUCAGCAUGGCCGAUCUCCUUCGGUUCACGCAUCAGUAAUUCAUCUAUUUGCGUUCAGAUAACGUUGUGACCAUUUCUUUCAGUAGCAGUAGCUUGCGUCGCUCUCCGCAUGAGUAAUCUUAAGUCUUUGGCAAUUCACUGUAAUAUAUACUAAUAUGCUCUUCCGCGGGGUCCCCCAUUUUAAUUCUUCAAGCCGGCGAGGUGUGUAAUAGAUUGGGAUGGCCUAUGGCCGUGAUCUAAGGGCAGUUGAUGUUUGUGAAUUCAGACUGUUCCUGUCGAUGUCAUGGAACGCAUUGUGGACU

Sequence
(XR_003241567.1):

UGCGACAAGUUUGGCGAUCGAUAAGCGGGAGGCUCCUCAGAUGGGCAGGCCGACCGUUGCUUCUUCCGUGGCCGCACUUGCUACCUCUUUCCACGAUUUCCUCUCAUUAUUAAACACCAUAUUGUUUUGUUUUGUUCCUUUCAAAUGUCCAGGCUACCAAGAUGACAAUGGUGUCAAAGCAUCUCCUAUUUGCUUUGUCAACCUUCUUCCUAGCGUCGCACCACCACUCAAUGAAGCAAGCAUUGUUGGAGGGGAAGUAAAGGGGCUGUCAAAUGGUGUGGAGCUUGGAUUUGGGGCAGUCGAGAAGGAUGUGGUCGAUGGUUUCUUUUUGUUAGUCACAGAAGACGUAGGAGGUAGGGUGUGACAGCCCUCUUGUGCUCAGCAUGUUCGCCAUCCAGCAGCGUCGGUAUGCCACAAGCUAGGUGAAGUAUUUGCACUUUGAUUGUGCCGAGCUCUUAAUACUAGCUAUUAGUAGCUGUAGAAGAUUUUCAAAAUGUCUUCUACCUACUAUUCCAUCUAUCCAAACCAUUAUUAUUUGGAUUAAGAUAGCAAGUAAAAUUAAAUGGAGGGUUGAAGAAGUUUGAAGUUGUCAUAUUUUCUAUCACAAAUUUUAAACGCUGUAAGUAAUAAAAUUAUUGGUAGCUAUCCCAUUUCUUUCAAAAUGCCCCCGGCAACCGGCGCUUAUGCCUGUCGCCGUCUACUCCGACGGCCGCCUCGUCGCCGCCAUGGUCCGAUCCCUAGCAGGCACCGCCUCUCCCCUCCCUCGAGCUACAUGUUGCCACCACCUCACAAGAAAAAGGACAAUAUAUACCACUCCAUUCGUUGGGUUUCGAUAAAAUGCCAUCCACUACGAUGCAAAAGAUAAAAUGCCACUCAGUAGGUUAUCUUCGGUAUAUUUUUGCCGCUUUGAGAAGGCUUAAGACUAAAAUACCCCUGUUGUGGAGAGAGAGGAAGUGAGAUAGAAGCCGGACGGCGGCCGUGGUCGCCGGUGGCGAGCACGCGUGGGGCGGGCGGUGGAAGCCUGACGGCAGUGGAGAAAGAGGAAGAGAGAAGGGAGCCGGACGACGGCAGUGGUCGCUAGCGGCGAGUGCGCGGGGAGGGGGAGGGACGGUGGAGAGAGAGGAAAGGAGAGGGGAGCCGGACGGCGGCCGUAGUUGCCGGCGGCGAGUACACGGGAAGGUGGGGGAGGGGCAGUGGAGAGAGAGAGAGAGGAAGGGAGGGGGUGCCGUACGGCGGCUGUGGUCGCCGGCGGUGGUCGCGGGGGCAAGGGCAGGGGCGGGCGGCGAGGACAAUGAUGGACGACGGGGAAGAUAGCGACAGGCGCCCGCCGCUUGCCGCUUACUGGCGUCGCGCGCGCGCAUGCACAUGUCCUCCUCCCCUCGUAGCCGCUCGCCGGAGCAGUCCUCCCCUCGUCGCGCACUCGUCGCCGGCGACCACAGCUGCUGUCCGGCUCCCCUCUUCCUUCCUCUUUCUCCCCACAGCAGGGUUAUUUUAGUUUUAAGUCUUCUCGAAGUGGUAAAAUAUCCCCAAGAUAACCUACUGUCAUUUUAUUCUUUACAUCGUAGUGGAUGACAUUUUAUCUAAACCCAGCGAAUAGAGUGGCAUAUUAUCCUUUUUCUCCCACCUCACUGCCUCCCGUAUCCCGAAUCCUACUACCAUCCUCCUUUUCGUCCUAUCCUCUCCCAGACCAUGGGGAUGGAAGCGCCAGAUCUACCGGCCCCUCCGAGGUACGCGCCACUCGUCAAACUCCCCUUUUCUUUUUCCAGUACCCCAAGAUCUGUCACCACCGCCUGCCGCCAAGUUCUAAACAAUGCAGGAUUGAGGUGGAGAACUGCUUCUCCCUCUCUGAAAAUACAGGGUCCAUGGUGGACAUGAUCAAUGUCGCGGCACGAUGUGCCUUUUUACUUUGUGCAAGUGAGAUUUCAUAUGAUGUUGGAGAACGCUACAAUUUCGCGAGCAUUCUGCUUCAUUUCAGAUACACCUGUUGCUCACUGCACAAACUCCUGAAAAUAUUGUACAGCUUAUACCCAAUCUUAUGGCUUGUUUUCAUCUGGAGUGCUCAAGCCUCAAGGGACAUACAUGUAUUACUGCUACUACCACCACUUAACAAGUUACAUACUCAUUUUCAUCUGAAUCACAAUUCUAAUACUUGUUUCUUAUGCCCAGUCAACACUAACUUAAACCAGUUACCAGACUGAACAUUAGAUAACAAAUGUCCCAGCUCCCUUAUCAUACUAGUGGUUAAUCUCUCACACGUCAUAUUAACUUAGAAAGAUGCUUUAAAUGAUAACCAAGUAUUACAACUGGUGCCUGAUACUCUGAUAGAAACCUUUGUUACAUUCUAGGACUCGGAUAAAUGACAUCAUCUAUUAUCAACAAGGGAUAACUCUUCUGUAGUAGGAUAUGGAUAUCCAUGUGAGGUCAUCAGAGUAGCAAGUUGAUGGAUCAUCGCCAUGAUGCUAUUGCUGCAUACGGAAGAUGACCUGAUUUAUCUAUAAAUGAUGCAGUGGUGCUGAUGACCAAUGCCAUCUCUGCAUCAGUCAGGUCCAAGUGAAAGCGAAAAAAAGGCUUUUCAGAAGACAAGAUCAAGUGACUGGACGGUCACAAUGAGAGCAAACUCGGGACUUAUCUUUGCCGUGAUGAUCCUGAUAAUGUGUGGCGCAUCUGCAGCUUCCAGUGACAAUGAUGAGCUGGUGGCACCGUUCGACACAUCCAAUGGCCUGAGAACGCUGUGAACGGCCACUUGGGCUGCUACCCCGGGUGCUUCAGAGACUGUGUUACAAGGAUGCCUGAAUGCUGUUCUGUGAGGAAAUUUGCUGUCAGCAUGGCCGAUCUCCUUCGGUUCACGCAUCAGUAAUUCAUCUAUUUGCGUUCAGAUAACGUUGUGACCAUUUCUUUCAGUAGCAGUAGCUUGCGUCGCUCUCCGCAUGAGUAAUCUUAAGUCUUUGGCAAUUCACUGUAAUAUAUACUAAUAUGCUCUUCCGCGGGGUCCCCCAUUUUAAUUCUUCAAGCCGGCGAGGUGUGUAAUAGAUUGGGAUGGCCUAUGGCCGUGAUCUAAGGGCAGUUGAUGUUUGUGAAUUCAGACUGUUCCUGUCGAUGUCAUGGAACGCAUUGUGGACU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

70

LEP:

14.23%

ME_num:

419

MEP:

85.16%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.73

Avg Expression:

11.25

Tip: OSA-PHAS9271580 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-1.256637940047770.000381711633716227
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.010453511678860.00657348556905809
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-2.622666520567591.46456241699599e-10
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-1.656781977904045.11000918163079e-05
5Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.571712755569858.82490305667032e-06
6Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"1.594333245878921.33183037250529e-06
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-1.577427869084051.43252550146865e-05
8Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279-1.354151212373150.000326331358678357
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-2.214339188845361.1700085329242e-10
10Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-1.030252535762820.0115849669256867
11Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.466593661744343.25565211573746e-10
12Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341-1.267525928847310.000128201633908337
13Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331-1.109680294611450.0139829830977856
14Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-1.227643166839040.000190815200829709