Chr:
Chr3
Start:
7798567
End:
7801804
Strand:
+
Ref_name:
LOC9271580
Sequence
(XR_001544235.2):
GUUUUGUUCCUUUCAAAUGUCCAGGCUACCAAGAUGACAAUGGUGUCAAAGCAUCUCCUAUUUGCUUUGUCAACCUUCUUCCUAGCGUCGCACCACCACUCAAUGAAGCAAGCAUUGUUGGAGGGGAAGUAAAGGGGCUGUCAAAUGGUGUGGAGCUUGGAUUUGGGGCAGUCGAGAAGGAUGUGGUCGAUGGUUUCUUUUUGUUAGUCACAGAAGACGUAGGAGGUAGGGUGUGACAGCCCUCUUGUGCUCAGCAUGUUCGCCAUCCAGCAGCGUCGGUAUGCCACAAGCUAGGUGAAGUAUUUGCACUUUGAUUGUGCCGAGCUCUUAAUACUAGCUAUUAGUAGCUGUAGAAGAUUUUCAAAAUGUCUUCUACCUACUAUUCCAUCUAUCCAAACCAUUAUUAUUUGGAUUAAGAUAGCAAGUAAAAUUAAAUGGAGGGUUGAAGAAGUUUGAAGUUGUCAUAUUUUCUAUCACAAAUUUUAAACGCUGUAAGUAAUAAAAUUAUUGGUAGCUAUCCCAUUUCUUUCAAAAUGCCCCCGGCAACCGGCGCUUAUGCCUGUCGCCGUCUACUCCGACGGCCGCCUCGUCGCCGCCAUGGUCCGAUCCCUAGCAGGCACCGCCUCUCCCCUCCCUCGAGCUACAUGUUGCCACCACCUCACAAGAAAAAGGACAAUAUAUACCACUCCAUUCGUUGGGUUUCGAUAAAAUGCCAUCCACUACGAUGCAAAAGAUAAAAUGCCACUCAGUAGGUUAUCUUCGGUAUAUUUUUGCCGCUUUGAGAAGGCUUAAGACUAAAAUACCCCUGUUGUGGAGAGAGAGGAAGUGAGAUAGAAGCCGGACGGCGGCCGUGGUCGCCGGUGGCGAGCACGCGUGGGGCGGGCGGUGGAAGCCUGACGGCAGUGGAGAAAGAGGAAGAGAGAAGGGAGCCGGACGACGGCAGUGGUCGCUAGCGGCGAGUGCGCGGGGAGGGGGAGGGACGGUGGAGAGAGAGGAAAGGAGAGGGGAGCCGGACGGCGGCCGUAGUUGCCGGCGGCGAGUACACGGGAAGGUGGGGGAGGGGCAGUGGAGAGAGAGAGAGAGGAAGGGAGGGGGUGCCGUACGGCGGCUGUGGUCGCCGGCGGUGGUCGCGGGGGCAAGGGCAGGGGCGGGCGGCGAGGACAAUGAUGGACGACGGGGAAGAUAGCGACAGGCGCCCGCCGCUUGCCGCUUACUGGCGUCGCGCGCGCGCAUGCACAUGUCCUCCUCCCCUCGUAGCCGCUCGCCGGAGCAGUCCUCCCCUCGUCGCGCACUCGUCGCCGGCGACCACAGCUGCUGUCCGGCUCCCCUCUUCCUUCCUCUUUCUCCCCACAGCAGGGUUAUUUUAGUUUUAAGUCUUCUCGAAGUGGUAAAAUAUCCCCAAGAUAACCUACUGUCAUUUUAUUCUUUACAUCGUAGUGGAUGACAUUUUAUCUAAACCCAGCGAAUAGAGUGGCAUAUUAUCCUUUUUCUCCCACCUCACUGCCUCCCGUAUCCCGAAUCCUACUACCAUCCUCCUUUUCGUCCUAUCCUCUCCCAGACCAUGGGGAUGGAAGCGCCAGAUCUACCGGCCCCUCCGAGGUACGCGCCACUCGUCAAACUCCCCUUUUCUUUUUCCAGUACCCCAAGAUCUGUCACCACCGCCUGCCGCCAAGUUCUAAACAAUGCAGGAUUGAGGUGGAGAACUGCUUCUCCCUCUCUGAAAAUACAGGGUCCAUGGUGGACAUGAUCAAUGUCGCGGCACGAUGUGCCUUUUUACUUUGUGCAAGUGAGAUUUCAUAUGAUGUUGGAGAACGCUACAAUUUCGCGAGCAUUCUGCUUCAUUUCAGAUACACCUGUUGCUCACUGCACAAACUCCUGGACUCGGAUAAAUGACAUCAUCUAUUAUCAACAAGGGAUAACUCUUCUGUAGUAGGAUAUGGAUAUCCAUGUGAGGUCAUCAGAGUAGCAAGUUGAUGGAUCAUCGCCAUGAUGCUAUUGCUGCAUACGGAAGAUGACCUGAUUUAUCUAUAAAUGAUGCAGUGGUGCUGAUGACCAAUGCCAUCUCUGCAUCAGUCAGGUCCAAGUGAAAGCGAAAAAAAGGCUUUUCAGAAGACAAGAUCAAGUGACUGGACGGUCACAAUGAGAGCAAACUCGGGACUUAUCUUUGCCGUGAUGAUCCUGAUAAUGUGUGGCGCAUCUGCAGCUUCCAGUGACAAUGAUGAGCUGGUGGCACCGUUCGACACAUCCAAUGGCCUGAGAACGCUGUGAACGGCCACUUGGGCUGCUACCCCGGGUGCUUCAGAGACUGUGUUACAAGGAUGCCUGAAUGCUGUUCUGUGAGGAAAUUUGCUGUCAGCAUGGCCGAUCUCCUUCGGUUCACGCAUCAGUAAUUCAUCUAUUUGCGUUCAGAUAACGUUGUGACCAUUUCUUUCAGUAGCAGUAGCUUGCGUCGCUCUCCGCAUGAGUAAUCUUAAGUCUUUGGCAAUUCACUGUAAUAUAUACUAAUAUGCUCUUCCGCGGGGUCCCCCAUUUUAAUUCUUCAAGCCGGCGAGGUGUGUAAUAGAUUGGGAUGGCCUAUGGCCGUGAUCUAAGGGCAGUUGAUGUUUGUGAAUUCAGACUGUUCCUGUCGAUGUCAUGGAACGCAUUGUGGACU
Sequence
(XR_003241567.1):
UGCGACAAGUUUGGCGAUCGAUAAGCGGGAGGCUCCUCAGAUGGGCAGGCCGACCGUUGCUUCUUCCGUGGCCGCACUUGCUACCUCUUUCCACGAUUUCCUCUCAUUAUUAAACACCAUAUUGUUUUGUUUUGUUCCUUUCAAAUGUCCAGGCUACCAAGAUGACAAUGGUGUCAAAGCAUCUCCUAUUUGCUUUGUCAACCUUCUUCCUAGCGUCGCACCACCACUCAAUGAAGCAAGCAUUGUUGGAGGGGAAGUAAAGGGGCUGUCAAAUGGUGUGGAGCUUGGAUUUGGGGCAGUCGAGAAGGAUGUGGUCGAUGGUUUCUUUUUGUUAGUCACAGAAGACGUAGGAGGUAGGGUGUGACAGCCCUCUUGUGCUCAGCAUGUUCGCCAUCCAGCAGCGUCGGUAUGCCACAAGCUAGGUGAAGUAUUUGCACUUUGAUUGUGCCGAGCUCUUAAUACUAGCUAUUAGUAGCUGUAGAAGAUUUUCAAAAUGUCUUCUACCUACUAUUCCAUCUAUCCAAACCAUUAUUAUUUGGAUUAAGAUAGCAAGUAAAAUUAAAUGGAGGGUUGAAGAAGUUUGAAGUUGUCAUAUUUUCUAUCACAAAUUUUAAACGCUGUAAGUAAUAAAAUUAUUGGUAGCUAUCCCAUUUCUUUCAAAAUGCCCCCGGCAACCGGCGCUUAUGCCUGUCGCCGUCUACUCCGACGGCCGCCUCGUCGCCGCCAUGGUCCGAUCCCUAGCAGGCACCGCCUCUCCCCUCCCUCGAGCUACAUGUUGCCACCACCUCACAAGAAAAAGGACAAUAUAUACCACUCCAUUCGUUGGGUUUCGAUAAAAUGCCAUCCACUACGAUGCAAAAGAUAAAAUGCCACUCAGUAGGUUAUCUUCGGUAUAUUUUUGCCGCUUUGAGAAGGCUUAAGACUAAAAUACCCCUGUUGUGGAGAGAGAGGAAGUGAGAUAGAAGCCGGACGGCGGCCGUGGUCGCCGGUGGCGAGCACGCGUGGGGCGGGCGGUGGAAGCCUGACGGCAGUGGAGAAAGAGGAAGAGAGAAGGGAGCCGGACGACGGCAGUGGUCGCUAGCGGCGAGUGCGCGGGGAGGGGGAGGGACGGUGGAGAGAGAGGAAAGGAGAGGGGAGCCGGACGGCGGCCGUAGUUGCCGGCGGCGAGUACACGGGAAGGUGGGGGAGGGGCAGUGGAGAGAGAGAGAGAGGAAGGGAGGGGGUGCCGUACGGCGGCUGUGGUCGCCGGCGGUGGUCGCGGGGGCAAGGGCAGGGGCGGGCGGCGAGGACAAUGAUGGACGACGGGGAAGAUAGCGACAGGCGCCCGCCGCUUGCCGCUUACUGGCGUCGCGCGCGCGCAUGCACAUGUCCUCCUCCCCUCGUAGCCGCUCGCCGGAGCAGUCCUCCCCUCGUCGCGCACUCGUCGCCGGCGACCACAGCUGCUGUCCGGCUCCCCUCUUCCUUCCUCUUUCUCCCCACAGCAGGGUUAUUUUAGUUUUAAGUCUUCUCGAAGUGGUAAAAUAUCCCCAAGAUAACCUACUGUCAUUUUAUUCUUUACAUCGUAGUGGAUGACAUUUUAUCUAAACCCAGCGAAUAGAGUGGCAUAUUAUCCUUUUUCUCCCACCUCACUGCCUCCCGUAUCCCGAAUCCUACUACCAUCCUCCUUUUCGUCCUAUCCUCUCCCAGACCAUGGGGAUGGAAGCGCCAGAUCUACCGGCCCCUCCGAGGUACGCGCCACUCGUCAAACUCCCCUUUUCUUUUUCCAGUACCCCAAGAUCUGUCACCACCGCCUGCCGCCAAGUUCUAAACAAUGCAGGAUUGAGGUGGAGAACUGCUUCUCCCUCUCUGAAAAUACAGGGUCCAUGGUGGACAUGAUCAAUGUCGCGGCACGAUGUGCCUUUUUACUUUGUGCAAGUGAGAUUUCAUAUGAUGUUGGAGAACGCUACAAUUUCGCGAGCAUUCUGCUUCAUUUCAGAUACACCUGUUGCUCACUGCACAAACUCCUGAAAAUAUUGUACAGCUUAUACCCAAUCUUAUGGCUUGUUUUCAUCUGGAGUGCUCAAGCCUCAAGGGACAUACAUGUAUUACUGCUACUACCACCACUUAACAAGUUACAUACUCAUUUUCAUCUGAAUCACAAUUCUAAUACUUGUUUCUUAUGCCCAGUCAACACUAACUUAAACCAGUUACCAGACUGAACAUUAGAUAACAAAUGUCCCAGCUCCCUUAUCAUACUAGUGGUUAAUCUCUCACACGUCAUAUUAACUUAGAAAGAUGCUUUAAAUGAUAACCAAGUAUUACAACUGGUGCCUGAUACUCUGAUAGAAACCUUUGUUACAUUCUAGGACUCGGAUAAAUGACAUCAUCUAUUAUCAACAAGGGAUAACUCUUCUGUAGUAGGAUAUGGAUAUCCAUGUGAGGUCAUCAGAGUAGCAAGUUGAUGGAUCAUCGCCAUGAUGCUAUUGCUGCAUACGGAAGAUGACCUGAUUUAUCUAUAAAUGAUGCAGUGGUGCUGAUGACCAAUGCCAUCUCUGCAUCAGUCAGGUCCAAGUGAAAGCGAAAAAAAGGCUUUUCAGAAGACAAGAUCAAGUGACUGGACGGUCACAAUGAGAGCAAACUCGGGACUUAUCUUUGCCGUGAUGAUCCUGAUAAUGUGUGGCGCAUCUGCAGCUUCCAGUGACAAUGAUGAGCUGGUGGCACCGUUCGACACAUCCAAUGGCCUGAGAACGCUGUGAACGGCCACUUGGGCUGCUACCCCGGGUGCUUCAGAGACUGUGUUACAAGGAUGCCUGAAUGCUGUUCUGUGAGGAAAUUUGCUGUCAGCAUGGCCGAUCUCCUUCGGUUCACGCAUCAGUAAUUCAUCUAUUUGCGUUCAGAUAACGUUGUGACCAUUUCUUUCAGUAGCAGUAGCUUGCGUCGCUCUCCGCAUGAGUAAUCUUAAGUCUUUGGCAAUUCACUGUAAUAUAUACUAAUAUGCUCUUCCGCGGGGUCCCCCAUUUUAAUUCUUCAAGCCGGCGAGGUGUGUAAUAGAUUGGGAUGGCCUAUGGCCGUGAUCUAAGGGCAGUUGAUGUUUGUGAAUUCAGACUGUUCCUGUCGAUGUCAUGGAACGCAUUGUGGACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.23%
ME_num:
MEP:
85.16%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.73
Avg Expression:
11.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.25663794004777 | 0.000381711633716227 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.01045351167886 | 0.00657348556905809 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.62266652056759 | 1.46456241699599e-10 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.65678197790404 | 5.11000918163079e-05 |
5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.57171275556985 | 8.82490305667032e-06 |
6 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.59433324587892 | 1.33183037250529e-06 |
7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.57742786908405 | 1.43252550146865e-05 |
8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.35415121237315 | 0.000326331358678357 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.21433918884536 | 1.1700085329242e-10 |
10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.03025253576282 | 0.0115849669256867 |
11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.46659366174434 | 3.25565211573746e-10 |
12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.26752592884731 | 0.000128201633908337 |
13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.10968029461145 | 0.0139829830977856 |
14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.22764316683904 | 0.000190815200829709 |