RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS9271331

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

4263990

End:

4270375

Strand:

+

Ref_name:

LOC9271331

Sequence
(XM_015786474.2):

ACUCCGCUCGCCUCCAAAACCACACCGCGCCGCGCUCGCGCUCUCGCUCUCCUCCUCGCUCUCGCUCUCUCGAUCGAUCGAAUCGAUUCCCCUCUCCCGAAUCAUCCCCUCCUCCUCUCGAUCCCCUCUCCUCUCCCCUCCCCGCCGCACGAAACCCUAGCAACCACCGCGCCCGCGCAAGCCAAGAUGCCUCUUCCCCGCCGCGCCGCCACCGUGAGGAUCCGCCGCGGCCAGAUCCACCGCGUCACCGCCAUGCCACCGCCGCCGCAGCAAGCCCCGGAGCCGGCCGGGCUGCAACUGCUGCUGCAGCCGGAGGUGGUGGCGCCGAACCACCCGCCGCCCGCUCCACCGGCGCCGGCGGCGGUGCCCGCGCCGCCGCAGCCGCAGGGGGAGGCGAGGUACCGUAGGCCGCUGGUGCGGCUGCAGGCCGUCCCCAACGAGGACCACGUCCCCGACAACUACGGCGACGGCCCCGACGAGCUCGGGAUCACGCCGGCGGUGUACCAGGCGCUGGAGCGCCACCUGCCGCCGGAUCUCGCCGGCGCCCCCGCCGAGGUGAAGCGCUACUUCAUGCGCAGCGUCCUCCGCAACUACGUCCCCUCGCCGUCGCAGCGGAUCAGGACGCAGAAUCAGAGGGAGUACAGGGAAAGGAUCUUGUCCGCAUACCAGCCAUUACAUCCGGAGCUGUACACAAAUGAUCCAUCAACUUUCAUCCUACCGGCAUUUCUUCAAGCCAUAAAUGGCAACACCGAAGAAAGCAUCACAAGCAUAAUGAUGGAGCCAGCACCGGGAGUGUUUGCAUUUCCUAUGCUGAAGCCCUCAUUCUGCCAGAUGUUAAUGUCAGAGGUGAACAAUUUUUUGAGGUGGGCACAAUCAGCGAAUCAAAGGAUAAUGAGACCAACAUCCUUAGAUAGGCAUGGGAGAGGUGCUGCCCUCUCUGAUUUUGGCUUGCAAGAGAUGUUAGACAAUCUGAUGAAGGAUUUCAUCUCACCAAUGUCUACAGUUCUUUUCCCUGAAGUUGGCGGCAAUACACUGGACUCCCACCAUACAUUCGUUCUUGAGUAUGGUGAGGCUGAUGGUGCUAGAGGUUUCCAUGUGGAUGAUAGUGAGGUAACACUAAAUAUCUGCCUUGGCAAACACUUCACUGGCGCUGACAUGUACUUCCGUGGUAUACGUUGUGGAAAUCAUGUUAAUUCAGGAACACAUGAUGAGGAGUAUUUUGUACAUCCCAACGUGCCCGGACAAGUCCUGCUGCAUCAUGGUAGUCACAGGCAUGGUGUCUUCUCAGUAACAUCUGGACGGAGGGUUAACAUGGUCAUGUGGUGCAAAAGCUCAGUGUUCAGGGAGAUGAAGAAAUUCAUGACUGAUUUUUCUGGGUUUUGUUGCGAGUGCCAGUUUCAGAGGACGGCAAGACAGGUGCAACAUCUUCAGGAAUUGACGGCUCGUAUCUCUAUCAGCGGACAGGAGUCAGAAGACGAAACUCCUUAAUUAAUAUCUGUCCGAUCGAGUUGGCCGGCCAACCAGUUCCUGAACAAUUAUGAACAGUGAACAGUGAAUAAUUAAGAACAUGUUGUUAUGUAUUGCAUGCUAUACCGAAUUUACUAGUGUUUUCAAUGUAUGUUUGUAUGAACCUAGCUACUGGUUCAUUGAAAACUUGCUGCAACUGACUCGAUUGGAGCUCAGGAUUAAACAACUUAGCCGGUUAGAGCCUAUGCUUGGUUAAUUUUCA

Sequence
(XM_015786481.2):

GCGUCACUCCGCUCGCCUCCAAAACCACACCGCGCCGCGCUCGCGCUCUCGCUCUCCUCCUCGCUCUCGCUCUCUCGAUCGAUCGAAUCGAUUCCCCUCUCCCGAAUCAUCCCCUCCUCCUCUCGAUCCCCUCUCCUCUCCCCUCCCCGCCGCACGAAACCCUAGCAACCACCGCGCCCGCGCAAGCCAAGAUGCCUCUUCCCCGCCGCGCCGCCACCGUGAGGAUCCGCCGCGGCCAGAUCCACCGCGUCACCGCCAUGCCACCGCCGCCGCAGCAAGCCCCGGAGCCGGCCGGGCUGCAACUGCUGCUGCAGCCGGAGGUGGUGGCGCCGAACCACCCGCCGCCCGCUCCACCGGCGCCGGCGGCGGUGCCCGCGCCGCCGCAGCCGCAGGGGGAGGCGAGGUACCGUAGGCCGCUGGUGCGGCUGCAGGCCGUCCCCAACGAGGACCACGUCCCCGACAACUACGGCGACGGCCCCGACGAGCUCGGGAUCACGCCGGCGGUGUACCAGGCGCUGGAGCGCCACCUGCCGCCGGAUCUCGCCGGCGCCCCCGCCGAGGUGAAGCGCUACUUCAUGCGCAGCGUCCUCCGCAACUACGUCCCCUCGCCGUCGCAGCGGAUCAGGACGCAGAAUCAGAGGGAGUACAGGGAAAGGAUCUUGUCCGCAUACCAGCCAUUACAUCCGGAGCUGUACACAAAUGAUCCAUCAACUUUCAUCCUACCGGCAUUUCUUCAAGCCAUAAAUGGCAACACCGAAGAAAGCAUCACAAGCAUAAUGAUGGAGCCAGCACCGGGAGUGUUUGCAUUUCCUAUGCUGAAGCCCUCAUUCUGCCAGAUGUUAAUGUCAGAGGUGAACAAUUUUUUGAGGUGGGCACAAUCAGCGAAUCAAAGGAUAAUGAGACCAACAUCCUUAGAUAGGCAUGGGAGAGGUGCUGCCCUCUCUGAUUUUGGCUUGCAAGAGAUGUUAGACAAUCUGAUGAAGGAUUUCAUCUCACCAAUGUCUACAGUUCUUUUCCCUGAAGUUGGCGGCAAUACACUGGACUCCCACCAUACAUUCGUUCUUGAGUAUGGUGAGGCUGAUGGUGCUAGAGGUUUCCAUGUGGAUGAUAGUGAGGUAACACUAAAUAUCUGCCUUGGCAAACACUUCACUGGCGCUGACAUGUACUUCCGUGGUAUACGUUGUGGAAAUCAUGUUAAUUCAGGAACACAUGAUGAGGAGUAUUUUGUACAUCCCAACGUGCCCGGACAAGUCCUGCUGCAUCAUGGUAGUCACAGGCAUGGUGUCUUCUCAGUAACAUCUGGACGGAGGGUUAACAUGGUCAUGUGGUGCAAAAGUUUCAGAGGACGGCAAGACAGGUGCAACAUCUUCAGGAAUUGACGGCUCGUAUCUCUAUCAGCGGACAGGAGUCAGAAGACGAAACUCCUUAAUUAAUAUCUGUCCGAUCGAGUUGGCCGGCCAACCAGUUCCUGAACAAUUAUGAACAGUGAACAGUGAAUAAUUAAGAACAUGUUGUUAUGUAUUGCAUGCUAUACCGAAUUUACUAGUGUUUUCAAUGUAUGUUUGUAUGAACCUAGCUACUGGUUCAUUGAAAACUUGCUGCAACUGACUCGAUUGGAGCUCAGGAUUAAACAACUUAGCCGGUUAGAGCCUAUGCUUGGUUAAUUUUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

453

LEP:

92.07%

ME_num:

34

MEP:

6.91%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosprem

Tau :

0.99

Avg Expression:

19.11

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-3.491364249709120.00767587472517968
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-2.357059089687460.0204172185143264
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-6.157788949753947.95775425920522e-05
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-5.13936690908320.00387850951558602
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-5.397076441867860.00099595584072278
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-5.564414935025720.000656389118567656
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-2.255871807594670.0204594471290072
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-5.971007631400310.00010619957997639
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-5.490567559035690.000327038029814481
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-4.900361432094280.00202359714105736
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-6.589841328402751.26197824001267e-05