Chr:
Chr1
Start:
19874722
End:
19880469
Strand:
+
Ref_name:
LOC9270848
Sequence
(XR_003242942.1):
CUUCUCCCUCUUGUCUCUCUCUCACCCUCUCCCUCCGCUCUCUCGCCGCCGUCGCCGCCACGCGCUGCCACCUCCGUCUCCCCCUCGCGCCACCGCGUCUACUGCCGCCGCCGCCGCCGCGUCCACCGCAGCCGCCUCGGGCGGGUCCACCUCUCCUCCACCGCCGCGUCCACUUCCGCCGCCGUCGCCGCGUCCACCGCAGCCGCCUUCGCCGCGUCCACCUCCGCCGCCGCCGCGUCCACCGCAGCCGCCUCGGUCGCGUCCACCUCUGCUGCCGCCGCAUCCAUUUCCGCCGCCGCUGCCGCGACGCUGUCUCCGAGCGCCGUCGCCAUCAUCGAGGCGAGCAGCCAUCUCGAGCGCCGCCGCUGCCAAGUGCCUCCUCCGGCCGCCGGCGUCCGGAUCCGGACUCCAUGUGGUCGGGAGACGUCGAUCUGACCGGCGGAUGUGACGAGGAGCUCGGCCGCGCCACACGGAGCUCAACCUCGGCGGAUUGGGCGACGGCGUCGGCCUCGGCGGUGAAAAGUCUCUGUUGCUGCUGCCGCCGUCGGGCAGUCAAGGUUUUUCCUGCCGGUAGAGUAUGGAAAAAGAAUCUUCCAUGUGCUAGGGCAAGGAAGCCUUUUGUAGUCAGCUCUCUAGACUUGCUUAUGCUUCUGCAGUGAGCACCCAGCAAUAGGUAAAUCUGCUCUCUUGGUUCUCUGAAUUAAAAGGACAUACAACUAUAGCAUGAUGAUCUUGCAGGAAAUUAUCAUGUCUUUUCAGCAAGAUUGCUCUAUAUGAAUCGAGUUGUCGAAAAAGGUGCCAUUUAGUCCACGGGCUUCACGAAAAUCAGUGUUUCAAAGAAACAAACCUUGAAACAUUCCAUGGGGUUCUCAGAUCGCGGAUGGCGGCGGCCACCAGGCGGAUGUGGUCAAGGGAGGACUGGCAGCGCUGAGCAACGACGUCUAGGAAUAGCAUCUCAGGUCAGUCCUCUUGCUCCCUCAUCUCGCUCCUUACAUAUUUCUGGAUUAUUCAGUUGAGGAGAAGGAAUUCACAAAGGAACUGCUCCUGCACCCACUCCCCAAUCGCAACGCGCUGGCCCACUUCCACUCCUCUGCGCAUCCCUCUGCUGCCAACGGACGCUAGCAACAUGUCAAACCCCAAGGCCAUCCCCCAGCUGUGCAAGUCACUGACUUUACGGUAUUGGAGUUCGAGUAGAAGAUCAGCUGCUCCGUCAUCGACGAUGGCCUGAUCCACAGAUGAAUUUUGGUGCUGAUACUUCCAGGGAGUUGGGUGCUCGAAGUUCAGAAAAAGCUGCUAGGUGGAUCAGGACAAUGGAAUCUGCCUUAAAGCCCCCAAGAAAGGAUGAACUUGUUAGCUGUUCACAUACAAGAUGGCAAGCUUUUAGGCUAAGCCGCUGCAGUAACCGCAUGCACUCAAUAGGUUGGACUGUAUUUUCUUCUGUCCAUAACGAUCCUAUGGCAUCUGAUGUUAUUGCACCUUCUCCAUGGACAAUAUUUGACUGUAAAAAUGGAUUCCGUUUGUUUACUGAGGCAAAAGAUGGUGGUUCAGAGGGGAAGGUAAUUCUUGUAUGAAACAAAGGUUGCAUAUCCUUCUUAUGACGAUUCUAGCAAGGUCGGUAUUGCCAUGGGUGCCUUGGAGCUUAAUCAUUUGCCUGAUUCUCAGCAUGCUUGUCUGAAAAGCAGAUUGACCUGAGUUUGUGUGCUAUAGCUGAUGAUGGAAUUUUUUUUAAAAGUAAUAUGAUUUUAAUGGAAAAUCGCAAAACUAUAGGUCAGUUAGGCGAAAUCGCAAGUUUAGCACCCUAUCGAACAACCGUGGUUCGACAAGGUACCUAUCGAACAACCACAGUUCGAUAGGGUACCUGUCGAACUGCGGUAGUUCGACAGGUGAUUAAAAAAAUCAAAAAAAGAGAAAAAUCACUGUUGCACACUGUUCACAAUACCCUAUCGAACUAAGGCAGUUCGAUAUGUGUCUGCGAGCACUGUAGCAUCACUGUUCACGCAACCCUAUCGAACUUUGGCUGUUCGAUAUGUCCCUGCCUAGCAUUGUAGUGAUACUGUUCAUGUAAUUUUUUAUUUGUUUUUGGACCACCUACCCUGUCGAACUGACGCAGUUCGACAUGUACCUGUCGAACUGUGGUUGUUCGAUAGGUAUCCCUGUCGAACCGCGGUUGUUCGACAGGGUGCUAAACUUGCGAUUUCGCCUAACUGAUCUAUAGUUUUGCGAUUUUCCAUUAAAAUCAUAUUGUUUUUAAAAAAAAUUCCUGAUGAACUUCCUGACCCCACUCUCCGUGGACGACCACCGUGCCUCCUUGCGGUCUUCUCAUCGCUCUCUGGUGGAGGUGAUCCAGCACGCUUGAACGGCAGUGAUGUCAACAAUGACCGUGUGUGGACAUCUGAUCCCCCUCCCUAUACACAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.36%
ME_num:
MEP:
65.85%
HE_num:
HEP:
11.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.60
Avg Expression:
16.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.05655463909419 | 3.76766798033543e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.29155155304025 | 1.44546429748369e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.15986893474291 | 6.85923310234863e-08 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.53735768199708 | 7.59443944368314e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.03517192225543 | 1.14789901990601e-07 |