Chr:
Chr11
Start:
25134218
End:
25137523
Strand:
+
Ref_name:
LOC9268641
Sequence
(XR_001541013.2):
UCUAACCCUAAUUCGCCUCCCCAUCCAUCCCGACAGUUGCGCAGGCGUGCGGCUGGCGGCGCGCCGCCGAGCAGGCGGGGCUUGUGGCGCCGGCCCGGCCGCGCGACUCGUGUCCUCGUGCUCGUGGUCGUGGGAUGUGGGGCGCCGCGCCGGGCGCAGGGCGGUAGGCGGCUGCGCCACUGAGGGCUGCCGGCACCUGGCCUGGCCGGCUGACCGGCUCAGCCGCGCAGGGCAGGACCGCAGAAGCAGGAGCAGGACAGCAACAGCAAGCCGCGCAGGACAGGAGCAGCACAACAGUGACAACACAAACUGAAACAUGAAGACGAAGAAGGGCCAGCUGUUGAUUUAAACUCUUUUUUGGAGAAACAAGAUGGGGCUUCAUUAAAAAAAAUUCAAUUUGCAAGCUAAGGACAAGGACAUCAUCGAUUAUUUUCAAAAUAUCAAGCGUCGAAAAGUUAAUCUCUAAAUUGGAAAAAUUUUGCACCUGGAAAGCAUGAUUUUGUUCUGUUCCAAGGAGGAAACUCUCCCACAAGGCCACAACGAUUGCCAAAUAAUGGAGUGCAUCUGUUCAUGCAGGAUUGACUUGGACAUCAGCCUCAAAGAGUGGUACAUGUUCCCUGCAGUGAACCUUGUCACUUUACUAUCUUAGAAUGUCAAUGUAUUGGAACAAACAUGUAACUAUGAAUGGGGAAUUGGAUACUAAAGAAAAUUUUGCCUUCUCUGCAUAGAGCAGAGAAAAAAAAAAGCAAAUUUCCGAAAAAUCAACUUGCUAUCUGCAAUCAUGUAUAGAGUAAGAUUGCAUCUUAUUGUAUGCCGGUGUUCUCUCAUAAUUAGCCAUUGAAUCAUAUUUCAGCAUCACAGAAUGGUCCAAGCAAAGAGUUCGAUGGAUCUUUUGCAGAGAAACUCCGCAAAUGUACAGAUAACAUUUAGGAAUUAGGAUCCUUGUGAUGUUGUUUGAGUGAAUGAACAGUGCAAUCAUCUUUCAGUAGUAAUACCCCUCCAUUAUUUA
Sequence
(XR_001541015.2):
UCUAACCCUAAUUCGCCUCCCCAUCCAUCCCGACAGUUGCGCAGGCGUGCGGCUGGCGGCGCGCCGCCGAGCAGGCGGGGCUUGUGGCGCCGGCCCGGCCGCGCGACUCGUGUCCUCGUGCUCGUGGUCGUGGGAUGUGGGGCGCCGCGCCGGGCGCAGGGCGGUAGGCGGCUGCGCCACUGAGGGCUGCCGGCACCUGGCCUGGCCGGCUGACCGGCUCAGCCGCGCAGGGCAGGACCGCAGAAGCAGGAGCAGGACAGCAACAGCAAGCCGCGCAGGACAGGAGCAGCACAACAGUGACAACACAAACUGAAACAUGAAGACGAAGAAGGGCCAGCUGUUGAUUUAAACUCUUUUUUGGAGAAACAAGAUGGGGCUUCAUUAAAAAAAAUUCAAUUUGCAAGCUAAGGACAAGGACAUCAUCGAUUAUUUUCAAAAUAUCAAGCGUCGAAAAGUUAAUCUCUAAAUUGAUUGACUUGGACAUCAGCCUCAAAGAGUGGUACAUGUUCCCUGCAGUGAACCUUGUCACUUUACUAUCUUAGAAUGUCAAUGUAUUGGAACAAACAUGUAACUAUGAAUGGGGAAUUGGAUACUAAAGAAAAUUUUGCCUUCUCUGCAUAGAGCAGAGAAAAAAAAAAGCAAAUUUCCGAAAAAUCAACUUGCUAUCUGCAAUCAUGUAUAGAGUAAGAUUGCAUCUUAUUGUAUGCCGGUGUUCUCUCAUAAUUAGCCAUUGAAUCAUAUUUCAGCAUCACAGAAUGGUCCAAGCAAAGAGUUCGAUGGAUCUUUUGCAGAGAAACUCCGCAAAUGUACAGAUAACAUUUAGGAAUUAGGAUCCUUGUGAUGUUGUUUGAGUGAAUGAACAGUGCAAUCAUCUUUCAGUAGUAAUACCCCUCCAUUAUUUA
Sequence
(XR_003239493.1):
UCGACAUAUCCCCAAUUCCCCUCCCAUCUAACCCUAAUUCGCCUCCCCAUCCAUCCCGACAGUUGCGCAGGCGUGCGGCUGGCGGCGCGCCGCCGAGCAGGCGGGGCUUGUGGCGCCGGCCCGGCCGCGCGACUCGUGUCCUCGUGCUCGUGGUCGUGGGAUGUGGGGCGCCGCGCCGGGCGCAGGGCGGUAGGCGGCUGCGCCACUGAGGGCUGCCGGCACCUGGCCUGGCCGGCUGACCGGCUCAGCCGCGCAGGGCAGGACCGCAGAAGCAGGAGCAGGACAGCAACAGCAAGCCGCGCAGGACAGGAGCAGCACAACAGUGACAACACAAACUGAAACAUGAAGACGAAGAAGGGCCAGCUGUUGAUUUAAACUCUUUUUUGGAGAAACAAGAUGGGGCUUCAUUAAAAAAAAUUCAAUUUGCAAGCUAAGGACAAGGACAUCAUCGAUUAUUUUCAAAAUAUCAAGCGUCGAAAAGUUAAUCUCUAAAUUGAGCUAUAUCGUGGGAUGGCGCGGUUUUUGCGAUCCUGUACGCUCGGCCAUUAGAUGCAUGUAACAAACUCCCAGGAGAGGAGAAUAAAAGGAGAAGAUGAACCCAGAAAAGCUGUGCAAGUUUCAAGCAGCGCAUACUCUAUCUCAGCUAGCUGCUCUGUUUUCUGAAUUUCUUCAGUCUACUGUAGCGAAACCUACAACCGUCAGAUAACACAGCACCGGUGAGAUUGAGAGUGAAAUUGAAUGUGGUGGAGCAUAUUUCCUGACAGGUCAUUGAUCCAAAAUGUAUAUUGCUUACAUCUGCUUGCAAUCCUUCUUCACGAGCUUACCAUUUGCUUCAGAGGUUUACAUCUAUUUAUUUGAAGGGUGAGGGAGGGUUUUUGCUUCCCUCCCCAUGUUUUUCUCCUCUCUUAAUGAAAUGUUUCAGCAAUCCUCUUAUGUAUUCAACAAAAAAAAUGUUUGAUGUAAUUUUACACUUUUAUGACACGUUGUGAAAAUCUUCAAGGAAGGAAAUAGAGCUAGCUAGCCAUGCAUGCUAGGAUAAUGCACUGCAUCAUUUUCUAAGUCAAAUCAAUAUACUUAACUAACAAUCCAACAAUUUUGUAGGGAGGGGUAUAUCCUCAAUUCCCAUAUAAGAAGAUGUUAUAUGACCAAUUGUCUCAUCAAAUAAUUCUUCAUCCUCAGAUAUAGCAGAACUUCUGUAUGAUGAAUGGAUAUAUCCUUAAUACCCAGCUGACUGGUUUAAUAUUAUCCACUGGAUAUAUUAAUUUCUCACACGUGUUUUGAAAUUUAUUACGCCAAUAUAUGGUGAAGUGCCAAAAGGCGCAAUUGGUCAGGCCACAUGACUGUUUAUGUACCCAUACAGCUGCUUUUUGCCAAGCUCACCUAAUGUGCUCAUAAUUUCCUCCAUAAAUUAUAUUUUAGGCAGUAAUAAUAAUGAUAUAUUGCUUCUUCUUGAUGCUAUCCAUACCAAGCUCAUCUUGAUAAUAUCCUACCUUCUUUCACACUAUAUAUAUAGCAGAACAUCUUGCAGUAGAGAACUUGCACACAUUUUGCUCCUGCAUGCCUUCUUGCUAGCAAGUUCCCAUUGUGGCCAGGCUUCCGCCGCUGGCCUCAAUGGCCAGGGCAUAAUUCUUGACGAACUCCGCGGGGUUGGAGUCUCCCCGGUACUUAGAGAGCUUAGGUGGUCGGAAGCCUGGUGGGUACAGCUCCUCUUGUAGCUGCCACAUCAGUGGGGACUCGAGGUUUACGGCGAUGGGGGGUCCCUUCGGAGGCUAGCUUCCCUCGAUCCGGAGAUACUCCCCCAACACCCGCAAUUUUGAAGCAUCUGACAAGACCAAGGAAUGGGAAAAAUUUUGCACCUGGAAAGCAUGAUUUUGUUCUGUUCCAAGGAGGAAACUCUCCCACAAGGCCACAACGAUUGCCAAAUAAUGGAGUGCAUCUGUUCAUGCAGGAUUGACUUGGACAUCAGCCUCAAAGAGUGGUACAUGUUCCCUGCAGUGAACCUUGUCACUUUACUAUCUUAGAAUGUCAAUGUAUUGGAACAAACAUGUAACUAUGAAUGGGGAAUUGGAUACUAAAGAAAAUUUUGCCUUCUCUGCAUAGAGCAGAGAAAAAAAAAAGCAAAUUUCCGAAAAAUCAACUUGCUAUCUGCAAUCAUGUAUAGAGUAAGAUUGCAUCUUAUUGUAUGCCGGUGUUCUCUCAUAAUUAGCCAUUGAAUCAUAUUUCAGCAUCACAGAAUGGUCCAAGCAAAGAGUUCGAUGGAUCUUUUGCAGAGAAACUCCGCAAAUGUACAGAUAACAUUUAGGAAUUAGGAUCCUUGUGAUGUUGUUUGAGUGAAUGAACAGUGCAAUCAUCUUUCAGUAGUAAUACCCCUCCAUUAUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.22%
ME_num:
MEP:
88.21%
HE_num:
HEP:
10.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.58
Avg Expression:
18.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.1397550313596 | 0.00323228792250252 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.08347908271276 | 0.000103309578955252 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.10392186898745 | 5.65950844729589e-05 |