OSA-PHAS9268440


Function Link


Basic Info

Chr:

Chr1

Start:

38527376

End:

38528432

Strand:

+

Ref_name:

LOC9268440

Sequence
(XR_001547362.2):

CCGAAAAUUCUGAGCUUGGGCUUUGCAGAUGGCCUAGUUGAGUUCAACCAAACUUGUUAAUUUCAUCGAAAAUAUAUAAAUUUGGAAUAAGUUCACUAAGUGACCGGAAUCUAAUCCAUGACCAUAAACCAUAAAACCGGAUAUCUCGAUCCCCUAACUCUUAAAACCGGUGUAAUUUGACUCCCUUAAUGUUUUUGGAGGGCUGUUUCGCUGACGUGACGCCUACGUGGCAUCCCAGUCAUCAAAUAAAUUAAAAAAAAUAAGUGGGGCCUACCUGUCAGUGACUCCACCCCUAUAUUCUCUCUUUUCUCUCUUUCUUGAUGGCAGCGGCAGCGGCUGGACGAGGGGAGCAGCGGUGGCCAUCGGGGCGCAGCGGAACCGGGCCGAGGGCGGCGGGCGGCGGCGGCUCGGCCGCGGCAGUGGGAGGACGAGGGGAACGGCGGCGGCGGCCCGCGCUGCCGCUCAUCGUCCUCCUCCUCAUGGUUACCAGCGUGGUCUCCGACGGCUCGCCGGGGUCGGGGCCAUUUCCAGCUGCAGCUCCGUCCACUCGCGCCGUUCAGCACCGGGGCAGCGGGACUAGCCGCGAUGUUGGCCGCCGGCGCCGCGCUGCUCGUGCUCGUGUGCGCCGCGUCGCUCCGCUGCUCGACCGCGCCCAAGAAGCUCCUCAGUGGCGGGGUCUCCAUCGAGGAGCCGCGCGCCGGCGGCGGCGGCGAGGAGUGCGACAUGUUCAACCCGCUCUACGCCUCCAGGGACUGCCCCUUCCUCGACGUCGGCUUCCGCUGCUCCGAUAACGACCGCCCCGACGAGUAGCUGUUGGAUUGUAAUCUUGAGCAUUUAUAUUCUAUUUUGUUUUGUUGCAUGUAGAGUUCGGUUGGAGUCUGAAUUCUGGCCGGUAGAAUAGCAUUUUCUGUUUUAGCAUAUUUGCUUCAUUCUUUAGCUGCGAUGAUCCGAGAUUGUCGUGAUUCUGUUAUGCAUGCAACAAACUCCGUGUGGAGAUGAAUAAAUAGAAGAGAAAACCGGAAAAGCUGCAUGGCAUUACGCAGCGAAAACUCUGUUC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

402

LEP:

81.71%

ME_num:

89

MEP:

18.09%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.75

Avg Expression:

1.62

Tip: OSA-PHAS9268440 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.561691220699260.011873327056286
2Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-8.284536185665151.89630865175044e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN3.335719316659287.26238500559669e-05
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.566707346319160.0160440483212027
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA2.269437524535510.0233037033068949
6Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.83397751781690.000188737103011501
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN3.291085815454827.12816216582508e-05
8Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-4.643397363380970.0333267402603985
9Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated1.535439620045010.0381677112493036
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA2.575674527411780.0104903430647671
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.039196748009070.0382966916701549