Chr:
Chr3
Start:
14258632
End:
14264650
Strand:
-
Ref_name:
LOC9268223
Sequence
(XR_001544264.2):
CUUAGCUACAGACUCCUCUCACCAUGGUGGAUUGGUGGGCAGAGCAGACGAGCAGCAUCGUGCUUGUAUUCCGGCGGGUAGACCCUCGACGGCCUAGCGUCCACCGCGGUGCUUGUAUGCUGCGAGGCAACGCGCUGCCGUUGGACGCUCGUUGUGGCGUGCUCGAUCGCCGGGGCCUUCGUGCGCUUGUACGACGUCGUCAGGCCUGCCUGCUAGCCGCAACUCAUUGCACGCUGCGCAUAUCGAGCGUUCUGCUGCUAGCUGAUAUUCCAGCGUCGCAGCGGGCUGCAGCUCGUGGAGGUCGCAACUAACCGCCGCUCCGCACCAGCUUCCCCGGCGGGGGACAGCCUGUUGCGUUGCAGCUCUUCUAGCAGCUGCACGAGCUCAUCAGAGUUUGUUGGUUGGAGCUUGGGAGGAAGGGGACGGGUAUCUUUUGGUCCAAAUAUUUCGACAAGUGAAGUGAAGAGGUAGGAAGUGCCAUGUCUCCAAUACUUAUAUAAUUGUGAUGGUAUGAUUAUAAAUAGAUGAAUAAUAAUGGUAUAUUACAAAACCUUAAAAAAAUUACAGUGUCAUGAUCCAAUUAACCGUUGUGUUCAAACAGUCAAAGACAGUCUGACAAGAUGCGGACCCAGUAGUAUAUUCAACAUUAGGGUGUGUUUAGUUUUUUGGGUGUAAAUUUUUUUUAAGUAUACGGACACACAUUUGAACUAUUAAACGUAGACUAAUAACAAAACAAAUUACAGAUUCCGCCUGUAAACUGCGAGACGAAUUUAUUAAACCUAAUUAAUUCGUCAUUAGCAAAUGUUUACUGUAGCAUCACAUUGUCAAAUCAUGGCGUAAUUAGGCUUAAAAGAUUCGUCUCACAAUUUACAUGCAAACUGUGCAAUUGGUUUUUUCCCCAUUUAAUUAAUGCCCCAUAUAUGUGUCCAAACAUUUGAUGUGACGUUUUUGGCCAAAAAUUUUUAGGAUCUAAACAAGGCCUGUGUUUAGUUCACGCUAAAAUUGGAAAUUUGAUUGAAAUUGGAACGAUGUGACGGAAAAGUUAGAAGUUUGUAUGUGCAAGAAAGUUUUGAUUUGAUGGAAAAGUCGAGAGUUAGAAGAAAAAGUUUAGAAGUAAACUCAGCCUUAGUUUAUUUUCAUGGUGCUAAACUGCUACUGCUGCUUAUCUACAUGCCCAUAGCAUCCUAGACUUAUCUCUUUCUCCUCCCCCUUAUCUCUUUCUUCUCCCUUUCAUAGCCACAUACAACUUCCCUCUCUAUCUGUCCCACACGGGCAUGAACGAUUCUUUUUUAUUUGUUUCUUUUGUGUGACUGAGACAUGAACGAUAUAUCUCUUCUGAACGAUAUAUCUCUUCUGUUUGAUUCAGUUCUUAGAUAGAAUGAUUUUAUUAAUUUAGGCAUCGAUCUAGCAUGCGGUCGGUAUUAAUUUAGGCAUCAAUAUGUGAUUUUGUCAUAGCCGGCUUGAAUAGAGCUCCUCCCUGUUUUGUUAUACAGAGGAGGCGCUGCCGAUGCAAUCCUAUCAAGCUUAGCUGGGGUAUUGGAUUUGUGUGUUCUUUUCCUUCUUUUCUUUCCUCCCUUCUGCUUGAGUUCUCUAAGAACUGAUUACCUGAUUGGAUUUUAUAUUGGUUUUUAAUUUUAUUUUUUGUCCGACAUCCCGAUUGAAUCUUGCAUCAAUUUUGAAUUUGUUCCUUGUCCGGGCAGAGGGCAUCGCUCGCAGACGAACGCGUAAAAAGAAACGGACAAAAACGGAUUGACGAACACAAAAAUUAUGUGACGAACGGAGAGUUAUUGAUUUUUUAAGUAGUAGUUAUUACUAUAUUAUUAUACGGGAUGGCUAUUUGGCAGUCGAAUGUUUUUUCUUGCCUCUAUCAUUCGUUUUUUAAGCCGUCGGAUUUCUUUGUGAUUCGUACUGGCUUGUAGUUCAUUUUGUAGUGUCGGUGUGUGGGCUUAUGAGCUUUUUAUUUGUGUCUGGGCUUUUGGGCUUUUUUUUGUGUGUGGUAAUUAUGUGGGACCCACAUCAGAAAUUCUUUUCGACAGCCUGUGUGGGACCCAUGGGCACUGUUCGAAUUUUGAAAUCCGCGCUUGUCUUUUUUGUGCCGACGGAGAGAGAGUGAGUCAGAUAGAGGGAGAGAGAGAGAUAUUUCUCUCGUUCUCGUCGUCUCAGGCGACGCGGCGGCGAUUCCGUCGGGCGGAGCGGCGGCGUUUCCGUCGGGAGGAGCGGUGGCGAUUCCAUCCGGUGAUUGUGCAGUCCUGUUGCGCAGUUUGCGGGAGGUGAAGUCUUUGGUUUGCUGGUGGCUACGACGCGGCUGUGAAGUUGGAGCUGAUUUCGUCAUGGGUCAUAGAAAAAGAUCAAAAGUGGAUAUUUCUAGUGAAUCUAACAGUGACAAUGAUUGUAGUUUGAGUUCUGAUAAUCAUGAUGGUGAUGUUCAUUUAUCUAAUCAUGAUGAAAGUUCUGAUAAUCAUGACCAACAUUUUGAGGAAAAUGAUCCUUUGCUUCAUUUAACUAAAGAAGAGCUUAUGAAGAAAUUGAAAAUAAAGCUUGGUAAAAGGCCAUUUACAGAUGACCAUAAAAAGAAGAGACAUAAAGUUGAAUCAGACUCAAUUAUCGAUGAUGCAUUGUUAGAGAUUCACAAUGAUCUAGUUCUCCAUUCUUUGAAAAUGAAAUUAAGCAUGCUUGGUGAACAGUCUAAAAAUAAGAGAAAAACCUUUGAGAAAGAUAACCAACAAGGGUGUGUUCUGACUGAUUGCAAAUUAUUGUUUUAUAUGAUCAUGAUCUUUAAUUUUUUAUAGUUUUUGAUAUGCUAUGGGAUAAGCUUGACACUUUUAUAUUUACUUGCUGAACAUUUAGCUGUGAUUGAAUGCUUGUGCAAGCAUGUGCUGCUCCAUGUUAGAAUGUCUGCAUACAUUUUUUUUCUUGCAAAAUAAACUGUAACUUUAAAUAUUUUUUCAUGUAAUUUUUUUCAGUUUCUUCAUAUAUGUAAGUUUUGUACUGUUACUGCAGUCAAGAAGCUGUUAAUAUUGAUGGAGUUCACUGCAAAUUCUCAUCUUUUGGUUCUUCAUUCAAACAAGGUGGAGAAUUAUCAAAUUUUGUAAUGUUUGUGUUCUGUCGAUAUAUGUUUAAAUCGAUUCAUCCUUCAAAAUCCAAAAGACACUAUUUCUUCUCUUCAAUUGGGAAUGAUCUUAUGAAACACCCUUCAAAAACUAAUUUUGGAAUGGUCCAAAAGAGUUUUUCUAGAGCAUCACUUGCUAGACCAAUUGAGAUAUGUGACAUGGUAUGUACUUAUGUAAUGUUUAAUUGAAUUAGUUUAUAUUAGAUUUCUCUGUUUUUACAUUUGUUUUUAUUGUAUCAUUUUUUCAGCUGUUUUUCCCAAUAUUGCAUUUGAGGCAUUGGUUUCUGUUUGUUGUUGAUUUGAAAGAUGAGAGUUUUGUUUUCAUUGACUCCUUAUUUGAAGAAGAAGAAGACUAUCAAUACAAUGCUAGAUGCAGAUUGGUAUGAUUUUUUUUUUGCAAAUUAUUAUAUGUAUAGAAUAAUUUAUUUUUAUGAUUGUUUCAUUUUGUCAGAUAUCAAAAUUUUCAAUUGUAUGGAGGAAAUUUGUCUCUGAACAUCCAAUUAACUUUGCUAGUUUCAAGAUAAUAUACCCACCUCGUCCAAGACAAACAAAUCGCCUUGAUUGUGGUAUUUUUACUCUGAAAUUCAUGGAAAUUUGGCGUCCAAGAGUUCUGCUAACCAACCAGUUCUCUCAAAAAGACAUUCCUAACAUAAGGAUUCAAUAUGUCAACAAGUUGUUUUUCCAUCCAUGCAACAUUAUGCUGAACUCUGCAACAAAGAAACUUGUUACUGACUAUUAUGCAAAGGGCUGAUUUGAUUCAACAGGAAUACUUUGAAAACCAAGAUUACUUUAGCUCAACAGUUUAUAGUAGAUUUGUAUAGAUACAAUUUCUGUGCCAUAUUGUAACUAUUACAGUAAGAUAACAACUUGAAAGGUCACAUCACAAAAGGUACCAAACUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.94%
ME_num:
MEP:
15.85%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
2.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.33075225467586 | 0.0348643470750082 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.69262888418687 | 0.00822694066758415 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -5.95624268655632 | 5.44292357928359e-26 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.75883502352014 | 0.00532376375300813 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.30262859122397 | 0.00825764593151118 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.47497558439265 | 0.0131778540878388 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.89541016203127 | 2.37840750209633e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.19157404296754 | 0.0307350169797567 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.17162425641102 | 0.0369880333691782 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.49898079989012 | 0.0416248805748221 |
| 11 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -2.71044239489515 | 0.00586561721831278 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.71881380770884 | 2.48672167359055e-07 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.492194983733 | 0.00131468393637301 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.31421348906493 | 0.00236731498009991 |