Chr:
Chr2
Start:
34802013
End:
34802669
Strand:
+
Ref_name:
LOC9268084
Sequence
(XM_026023056.1):
UUUCUCCUUCUCUCUGUAGGUCGAAUUGUAUUUGAGAGAGAGAGAGAUGGAGAGAGAGAGGAAGGAAAACGAUGGAGGAGGCAUGGAUCGAUCGCCUGCCGCAGGAUGUCCUCCAGAGAGUGAUCCCCCUCGAGACGCCGCGGGACGCAUGCCGCGCCGCCGCCGUCUCCCCGGCCUUCCGCGCCAUCGCCGACUCCGACGUCGUCUGGGGCAAGUUCCAGCCAGACGAUUCGUCCCUGCAGCUCGCCGACGGUGAGCUCUUUCCGCCGCCGCGUUCCAAGAAGGAGCGCUUCCUCGCCUCUCCGCCGGCCUACUCCUCCUUCCAGAUAGGCUCAGGGGCAUGUGGUUGGACAGGGGGACCGGGGCCAGGUGCUAUAUGCUCUCGGCCAGAGCGCUGGUGAUUAUCACUGGUGGAGAAACCCUUUGUAGUCCCGGUUCGUAACCCCCCUUUAGUCCCGGUUUCCAAACCGGGAGUACCAAUCCGGGACUAAAGAUCGCUAUCUUUAGUCCCGGGUGAAAUAACCGGGAGUAAAGAUCGAUCUUUAGUCCCGGUUGGUAACACCAACCGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
76.63%
ME_num:
MEP:
21.54%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.91
Avg Expression:
5.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Azucena // root // control--/--Azucena // root // Al | -1.04469035278284 | 0.0106660277399305 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.86253293034431 | 1.19347546947173e-12 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -4.42124123947373 | 2.07632652156177e-05 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.26590966241943 | 0.000224349442947358 |
| 5 | 9311 // leaf // control--/--9311 // leaf // salt | -2.06508936278085 | 0.00049780824528454 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.66187942746586 | 0.00572757499336803 |
| 7 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.16790432448501 | 0.0401394625490355 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.60416850920237 | 3.63648207197019e-05 |