Chr:
Chr3
Start:
11275480
End:
11276658
Strand:
+
Ref_name:
LOC9267531
Sequence
(XR_001544388.2):
GGAAGCUCACACGCUAGAGACCACUAGGCCAGCGCGAGCGCCCAGCUAUAGCCCAUCGAUCUCUUGGAAAAGCCUGAGAUCAAAUCCCAGCUUAACUCCCCAAAGAUUUCCUGACUCCAAAUCUCCAUCCGCUCCGCAGCUACCUUCUCCCCAUAUAUACACGCGCACUCCCUCCCCCCUCUCCAGCCUCCAUGACCCCUCCUCGCUCACCUUUCUCUCUUGCCUGAGCCAAGAGCUACACUUUCUAUAUCCACCACUUCACCGUGCAAACCCCAUGCACACGCCUUGACAGAAGCUGAGCUAGCUUCUCCUGCGUCGCUGCAAGCUGCUACUUUGGUUCGUGACUGAAAGCCAAAUGGAAGAUACGGAUCAGGAGCUAUGCACCGUUGCGGUGGAGAUGAUGAGUUCAGGAAAACUCAAGCCAUGUAGACACUUGUUGUUCUAUCAAGACUCCCUUCACCGAGAAGCAUCCAUAAAAAUGGUUCAUGUUUAGCAAUAGCACGGUGUUAUCCUAACUGAGCUUUUCUUCUAGCCACCGUCCACAUCCUUCUUCAAAACCUCAACAUCACUUUGUGUGGGAAUUAAAAGGAAUUGGUCUUCUUGACCUUGCAAGACCUUUUCUUGACCUUGUAAGACCCAACAUCGUUGUGUUGUUUUUCUUGUUUCUUAUUUUUCAAUUUCAUCCACCUCUUCUUUCUACCUCCCAUCUUUCUCCUAGUUCUUGCCUUCUCUCUCGGUCUAUCCCUCCUGAGCUGUAUUGAUCACUUUCUAUGUUAUUUUCUCGAUGUUUAAAAGAAAAUUAAUUUUGUUUAGCAAUAUACGAAGAGAUUGUGAAAUUCUAGUAUACCUGUAAAUUGUAAUAUUAUUGCUUGCGUGAUAUAAUUUGUAAUAUUAUUAUUGCUUGCGUGAUAUAAUGUAUUUCUGCAGUCAGAGUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.37%
ME_num:
MEP:
31.5%
HE_num:
HEP:
19.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.92
Avg Expression:
90.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.49234367773681 | 0.00143970099640452 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.27657939016726 | 0.00495461041152215 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.00039870405876 | 0.00325737502876331 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.46190686168829 | 0.00306941732618302 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.94874726031696 | 0.000241966500952 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.52130739270014 | 0.041658198882522 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.33501579792054 | 0.0021885012664904 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.04201345568869 | 0.0315565310814879 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.01675068551983 | 0.0245842407188122 |
| 10 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.51589480694477 | 0.0109060599693179 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.6395567087208 | 0.00069766686465007 |
| 12 | 9311 // leaf // control--/--9311 // leaf // salt | -2.20895035085736 | 0.000142397341559211 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.3790856535577 | 0.0350690234903887 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.48144682826722 | 0.00104150818850658 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.77142593678483 | 6.33739962472201e-05 |
| 16 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.75450271289172 | 5.69148412977044e-09 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.18460020459294 | 2.39025083537209e-08 |