Chr:
Chr12
Start:
5020938
End:
5028379
Strand:
+
Ref_name:
LOC9267371
Sequence
(XR_001542261.2):
AGGUCAAACUCCAAAUUUUCCACCCAUCCAGAUCCAGAUCCACACCAGCCACCCGACCGAGUCACGUGCGUCGCCGGUCGCCAGUCCGCCGGGAGCCGCGCGCGCCGCCGUUCGCCAGCCACCUCCGGCGCCGUUCGCCAGCCACCACGCGCACCGCCACUCGCUGCCUUCUCGCCGGGAGACUGAAGCUGCCGUCGCCGGCCGCCUUCGUCGACGCGCCGCCGGGCCGCGCGACGCCUGAAGCCAUCUUCACCAGGAGCGGCCGGCAGGCUCCGUCGAUGCGCCGCCAGCCUGCAGCCAUCUUCAAUGGGAGCCGUCGUCGCCGUGCCGCCGGGAGUCGCCGUCGCCGCGCCAAUGGGAACUGCCGUCGCCGCCGCCAUCUGCCGACCAUGGCUUCGGCCUUCAGCCACCUCCCCCCUAAAGCUACAAUAGCGACGAUGCAAGGGAUACUUUGAUAGCCGGCCAGCAUUUGAUGCUAAAUAAAGGGGCUUUCCAAGCACACUUUAUAAGACCUGAUAAUUUAGCCUAUCGGAGAAACUGUCCCUUCAAUCAGGAGAGUUGGAUAAUGAUUUUAGGGAUUCCUUCGGAUUACAUAAAUGAGACUCACAUUCAUAGGAUUGUAAACGCUUUUGGGAAGUUUAUACAUUGGCAUCACAAAAUAGUGUUCUUGGCAGAGUUCUGGGAAGUUAAUCCAUUGGCAUCAAAGAGAUAGUAUUCUUGGCAGAGUUCUGGCAAAAUGUCUUUAUACAGACCCUAGUGAAGUGCCUAGAAGAAUUGUUAUGGAAAAUCCUGUUAAUAUGGGAGGUAAUGGAGAGUCAUGGACUCUGCACACUUCUGUGCUUAAUUGGGAGUUCACUGAUGUUCUUCCUAUGGAUGAGGAUUUACCCAUUUUGUGGUAGCAAAUUGAGGAUUUGCAUAUGGAGAUACCAAAUAUGCAGCAUGAGAAUAAUGUACUUCUUGAAUUUAGGGGAACAACAUGCUGAAAAGAAUAAUAUGCAGCAUGAGAAUAACGUACUUCUUCAGAAUUUAGGGGAACAACAUGCUGAAAAGAAUGCUCCUGGCCAAGUCCAAGAAGAACAUGCUGAAAAGAAUGCUCCUGGCCAAGUCCAAGAAGAAAUGCAGUAAUACUAUGUCUCCAUUGAUGAUUUUUCCUUGGAAGAUUCAGAUUCAGUCCAUAACCUGGAGUAGUAUGAAUUAAUAUAAGGAACUGGACCAGUUGGAGAUAGUGCCUUUCAAGUUAUCACUGUCUUCCUUCCCUUUCAGCAUUCUUCCUCUUAAUGUUUGCUUUACCAUUGCAGAAAAUGUGUUUAAACUAUUGAUCACUGCUUUCAGCCCUCCAUGGUCAGUUCACCUGAGAUUACGCCAACCUGGUCUUUAAUCAAAGUUGUUCUUCUAGAUUUGGUAACAAACCAAGUCAGUGGCAUUCAGGCUUGAUUUCUCUCGGUUCUGAAUAAGGUAUAAAGCAUGAGUACUUAUUUCCCAUCACGCAAUAAAAAGUAUUCAUCUAUAAAGUGUGAACCACAUACCUUGCUAAAUGUAGUUAGUUUUUUCUUUCCUCAACCAUAUAUAUGCUCAUUUUUAAAUCAUGAAACUAUUAACUUGUAUUCACAGUAGAAAGAACAUCAAUUGAGAUGUCAGCUUCUCACAGGAAUUUUUUUUUUGAGAUAUUAGUUGUCCGAAAAUUAAGCAUCAUGAGCUCAGGAGCCUCUGCGGCUCUGUCCUGGCUUUGAGUCCUCCUAACAUAUACAUUAUCACACAAUAUGAAUAAGGAGUCUAACAUUUUAAAUAUAUAUUUGCCAUUCAAGCUUGUAGUUCAGUUUUAACAACAAUAAUACCUUUUGUAGUAGAAACAUCUAUAAACCUAAGAAUAAGUACAGGCUUAUCAUAGGAUUUGCAUUAAUAACACUCGCCAAUAGGAUUCUCUACUUGCAUAUCUACUACCUUUUGUUAUCUGAUUGCCUCCAUAUCAGAGCUUGUAAAUUUUCCACCUGCUGUUAAAAUCUACUAGCACCAAUAUCUCUCAAAGAACAGGUGCUACAAUAACUGUAUUUAGCUUAUUUUGGAUUCUAAGUACUACUUCAGUGAUAUCCAGAACCAAGAAGUAAAAUACUUGUUUCUCCUAGCUAACUAGAAUAACAUCUUGGGUUUAAUCCAAAGCAUUAGAAUGAUCUUCACUGGGAGAAAAAAAAUAUUGCAAAUUGCUAGCAAAAUUUAUUAACAAUGUUCCAAGAAACCAAUCAUAUUAGGGUGAAAUAUUUUUUUUCUACAUAAACAUGGCCAGUUGUAAUCCUUUACCAUUAGCAUUCUAUAAAACAAUAAAUGAACACAUUAUUUCCCUUACUCCACCACCUGUUGAGAAAUAUUUCAUUUAUGACUAAGAAGUAUUUGCAUUCGUUUUUCUAUGUGUAUAUUGUUAUUGUUUCCAGUCAUCUGAGAAAACAAGUCCUAUAUUUUAUUUGUAUACUAAUGUUUUGAUAACUUUGGCAAUGCAUCCUAACCACUACAUCUUGUGCCCCAAAACAGUUAUAAGCAUCAUCUUUACAUCCUCAACUCUAAAAUUUAGAAAUAAGAUGGGAAUAUUUCAUGAUAAGACAAAAUAGUGAACUUAUUCUCACAAAAAUCUAGAAAGAGUUUAUCACAUUUUUCAAGUGUUUUUAAUGUAUGUCUCCCUCUUCUUGUGAUUUGUAGUUUUCAUGGUUUUAAUUAUAACUAACAUUAUCCAAAUUUUUUGCUUUAGAUUCAUGUGGCAACUGCUUGUAGCAAUGACAAUUGCAAUCUACAUUCCUAGAUUUCUACUGUUGGUAGGAUUUGCCAUAGGAUUAUCUAUAGAUUUAUGAGGUUUGACCUUCUUAGGCAAAAAAAAAUACAUAACAAACAACAUAUACAGAGAAAACAUUGACUUCUUAUUGAGGACACUACCACUGGAAGUCUCAGCUAGUGAUACUUUUUUUGCCAAGUUCAAUGACCAACUCAACCCAAGAGCAGGUGUAUGCAGUUGGGCAGUGUUGUGAUGACACUGAUAUUUUUAUAUCUUGCAAUAUCUUUUUUCUCUCUCUAUGAAGAUCAUUAUAAUGUUUUAGAUUAAAUGCAAGAUGUUCUUUUAGUAUGAGUCACUAAACAUCAAUUUUACACUGAGUGGGUCUGGGGGGCCUUGGCCCCCCGUCAAUUUUACCCCUAGUAGAAUAGGGUGCCUUAGCCUUCUAGUUACAUUGAGCGGGUACAAGAUCAGCCUUAGAAAAUCUUGCACUCUGAACUGUUUAACUCAGGCGAGAACUGUGCGAGGCCGAAUAUGGUGUAGUUAUAUUUACUCCCUAGGACCUUCUCUCUUUACUCCUAGUUGGAUCUGCGUCUUUUUCACCUCCAGAAUCACCAAAGUCUCCAAUCUGUUUGCUCCUAGUUAGUUCUGCAUCAUUUUCAUCUCCAGAAUCACCAAAGCCUUCAAUUUCCUUGCUCUCAGUUAGUUCUGCAUCUUUUUCACCUCUAGAAUCAACAAAGCCUUCAAUAUUUUUGCUCCCAGAUAGUUCUACACCUAUAUGUGAAACAAUGCUCAUAAGUUCUAUUUGGGAUUGAAGUAUAUAUAGUACAUAUCAUUGGUCAUUCUUUUAGAAGUGCUUACUCGAGAGCUUUGUUCGUUUCUUCAGUACAUGUUUCUUCCUCAAAAGAAAUAGUGGUGCUAGGACUACUAUGAUUACCACAACGCUCGGCACCACUAUAGCCACUAUUAGAAUAGUUGUAUGGUUCUUAUGAUUUGUUCCUGCAUGUGAUUGUCAAUUGUUAAUUUAAUGGGUAUUACAAUUUCAUUAGCAAGAAUGAAAAUAACACAUCUAUUUACAAACAAGAAUGUAAAUAUAAAGCACGGUGAGUUUGGUAUACUACCAAGGCCCCUAGUAGAUAGUGUCAAACCAAUAUAAACUAACAAUAGUUUAAUCAGUGUAUGGCAAUAGAUCAGCAUGUAUAAACAUACUUUUAAACACGGAAUGAGUCUAAUAUAACACAUAGUGAGUUCGGUACCAAAAAUGAAAGCAAAAUUGUAGGGCCCCUAGUACCUUUUGAACGAAUGUAAACUAAAAAUAUUUCAAUCAAUGUAUAGCAAUAGAGUAUCAUGCAUAAAUAAACUUUCAAACAUAAAUAAAUUUUGCAUCUCAUACCUUUAGGCUUGACUGUAGCUUGAUAGAUGAGUUGGUCCAACAUUGGAGGGCCCGUGAAGAAAGGAUAUCCCUCAUAACGCAAGUUACACCAUAUUGUUGCUCUUGUCCCACCUGUUGACAUACUAAAAUGCGAACUAGAGGCUAGAUCUCCAAACAAAUCUUGCACUCUAAACUGUUUAACUCAGGUGAGCACUGUGCGAGGCCGAAUAUGGUGUAGUUAUAUUCAUUCCCUAGGACCUUCUCUCGUCCUGUAGCAAAUCUUUUUGAUAGGUCUGUUAUCUUUCUUGCCACAUCAUCAACAAAUAACAUGACUGUCUCACUAAACGACCUGCCCUGACUGAUAUAACCAGGGUUGUCCUAUAAAGCUAUAUUUUCCAUGUCAUGUUGAAUAUCAAACUUAAAAUCUUUUCCAGAAAUUCCGAGGUGGCAAAAGUUGUAAAAUGCUAUACUAUCCCUCUUUGAAGAAUAUACUUGUUGUAUGUCCUUAAUGGCCUUGGUGAUACACCUCUUACAGGUACUAAUAUCAGUGUCGCCACGACACUGUGUAUACACCUGCUCUUUAGUUGAGUUGGUGAUGACCUUGGCAAACAGAGUAUCACUAGCUGAUACUUUCAGAGGUAAUGUUCUCAAUAAAAAGUCAAUGUUCUCUCUGUAUAUGUUGUUUGAUUUAUAGUUUUUGCCUUCACAGUUCAAACUCUAUAAAUCUGUAGAUAAUCCAGUGGCAAAUUGUACCAACAGUAGAAAUCUAAGAAUGCAGAUUGCAGUUGUCAUUUCUAUGGUUGCCACAUGAAUCUAAAAUAAGAAUUUACAUAAUGUUAGUUACAAUUAAAAUCAUAACUACAAAUGGCAUGAAGAGGGAUAAAGACACUAAAAAGCACUUGAAAAAUAUGAUAAUGUGACAUCUUACUGAUUACUAGUAGUAUUUUUUGAAGGUUAUUCAGCACUUACGAUGACCUAUUUCAAUUCGUUUACCAAAACAAUGAGGAAACAUAUCUUUUCAUUUUUUUUCCCUUUUUUUCUAUUAUGACAUGUGCUGUGAUGCAGCUAUUUCUGUCAUCACCAUGAGUUGAAAUAAAUGCUAAAUGACUAGAAAAAAGAAUGGGAACUAAAUGCUUCCAUGUGAAACUAUUUCUGCUAACAUGCUUUGUUGAAGAUUUUUGAAUUGUAUACUGGUUAAGUGGUUUUUCUUAGACGUGGUAGUCACACGGUAAAGGUAUUGGAAGAACCAUCAUGACUGAUGCCAUCAGAGAGUUUGAUGUUUAUUUCAGCUACCACUACCAAGAAAGCUGACGUUGGAUCUUUCUGUGCUUCCGAAGAAGGCUAUGAUAAUGCAAAUUAAAUGUCAGAAUUUCAAAGAUUCAUUAGUUGGAGUAAGAAUAACUGAAUAAAGAUGCUGCUAUCUUUCUGAUGCUUCCGAAGAAGGCUGUUUUUUUAAAUAUAUAAUGUAAUUGACUUUUGUAAUUCGGCUGACUAUUCAUCUUUUUUAGAAAUAUUUGUGCAAAUAUACAAACAUACAAGACAUGCUUAAAGUGAUUUUGAUGGCAGAUUUAGUUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.15%
ME_num:
MEP:
68.09%
HE_num:
HEP:
9.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.74
Avg Expression:
24.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.51513631073667 | 3.91463707953778e-09 |
| 2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.32407210069117 | 5.21994230145826e-11 |