Chr:
Chr12
Start:
25881787
End:
25887379
Strand:
+
Ref_name:
LOC4352772
Sequence
(XM_015762909.2):
GGAGGAGAGAUGUAGCGAAACAUCAAAGAUGUUGGCUCUCAUGCAAGAGUUAGCUUAACACAAGCUCCAAGACAGAAAUAAUAAAUGUGUAAGUGAGAGAUAGAGAUAGAAGAAGAAAAUUAUAGCCAACCUUAUACCUAAUCUAUUAUAUGUAUUGGCUCUAAGACGGGCUAAUAAUAGAUAGUGAGUUUUACUAUUAUCCUUGCACUUAGAGCAAGUUUAAUAGUAUAGCCAACUACUAGCUACAAUUCAUUUAUAACCAACCUAAUAGCUCAUUCAUACAAUAGUUACAUACUACACUAUUAAUACCUGGUCCCACUUAUCAUACACACAGUGUGUCUUUGAGUUCGUGCUACAGCUGACUAUAAAUCUGUAGCCCGCUGUUAUCCAUCUAUUUAAAAUAUGUUUGUAGCUGGCUCAUAGCCUGCUAUUGUAACUGCUCUUACCUACACAGAUGAUCCAUGCAGAGAAUCAGAAUCAACACUAGCAGUAGUCCAGUCUCCAGUGUGCCGCGCCGCCCAAAGCUGAGCAAUCAUCGCAUAUCCCACCACGAUCCCCUCCCAAACCCAAAGCGAAAUCUGCUGCUGCUGCUCCUGGUGGCGCGAGUGUGAUUGAUUCGAUUGAUUGCCGCAUCCACAGUUCUUUUCCUUUUUGUGAGUUUCUUUUUCUUCACCUCCACUUCUUCCAGUACGGAAAAGAGUGAGAGCACUGCAAGCAAAAAAGAAGAGAGGAGGAGAUUUGUUAGCGCCUAAUUUUAGCAGCAGCAAAGCUCGGAUUCCCCUCCCAUGGCGGAUGGCGGGGCGACAGGAAUAGGCGGAGGAUAGGGAGAGAUUGUCGGAGGAGAAGUAGGGAGAGGUUGGUUUACAUGCGAGCAGGAGGAAGAAGAAGGAGGUGGCGGGGCACCGGCCGGGCGAUGUAGAGGAGGCCGCGGCGGCGGCGGCGGCGGCGGUGGUGGCGGUGGUGGUGGAGCAGAGACGGCGAAGGCUUCAUCUUCAUCUUCUUCUUCUUCUUCGUCCUCGCGAUUUACUUUCACAUUCCGAAGUUUGCUACACUUCCCAGGAGUAGAGAAUAUCCGAGACACCUCUCAUCUAUGCUUAUCAGAGUCUCAUCUAUUUCCUGUCUUUGUCAUAGACAGAUAUUCUCAUGGCUAGAACCUCUCCUUUUCCACCUCUAACUAGACGGAAAAUCGCUUCCCUCAAGUUGCUGAUACCAUGUGUUCUAGUUCUUUCAGUGGCUGUUAUUGUUGUUACGCAGUAUUUCCAUAAUAUCUCUUACCUUCUGCGGCCACUGUGGGACACACCACCUAAGCCAUUUAUCCGCAUCCCACACUACUAUGCCCCCAACAUCUCCAUGCCGCAGCUCUGUCAGCUCCAUGGUUGGGGUAUCCUCCCCACCCCUCGCCGUGUCUUUGACGCCGUCCUCUUCAGUAAUGAACUUGAUAUUCUAGAAAUUCGCUACGGUGAGCUCCUUCCGUAUGUUGACAGGUUUGUCAUCCUUGAAGCUAAUGCCACAUUCACUGGCAUCCCGAAGUCACUCUCUUUCUUGGAAAAUAUCAAUCGCUUUGCAUUCGCUGGCUCCAAGAUUGUGUAUGACAUGCUUCCUGUCAUGGAAAUGGAUCCCGGUUCUCACCGUCAGCCCUUCCAUGUUGAGGCCGGCCACCGUCGUGCGCUUAAUAUGCUGCUGCGAAGAUCAGGCAUUGCUGUGGGGGAUGUAUUGAUCAUGGCUGAUGCUGAUGAGAUCCCUAGCCCUGAGACGGUGCAGUUGCUCAAGUGGUGUGAUGGAAUACCGCAAGUCAUGCAUCUCGAGCUGAAGAACUAUAUGUACUCCUUUGAAUUUCCUAUAGACUACAACAGCUGGAGGGCCACAGCACAUGUGUUCACUGAGCAUACAUUGUACCGCCACUCCCGUCAGAGCAACCUUCUGCUGGCUGAUGCAGGCUGGCAUUGUAGCUUCUGCUUCAAGGACAUCAAGGAGUUUGCUUUCAAGAUGAAGGCAUAUAGCCACGCAGACCGGGUGAAGCAGGACAGCUUCCUAAAUCCAGACAGAAUCCAGAGGGUCAUAUGUAAUGGGGAGGACCUGUUUGACAUGCUGCCUGAAGAGUACACAUUCAAGGAUCUCUUCAAGAAGAUGGGACCCAUACCAAAGUCAGGAUCUGCUGUUCAUCUGCCUUCCUAUUUGAUCAAGAACGCAGACAAGUUCAGAUUCUUGCUCCCUGGUGGAUGCUUGAGACCAGGCUAAAUCAGAGAUGGUCUUUAACUUUGCUAGCCAACAGUACAACUUUUAGACGUGAUACUGUUGCUUCUGCUGAAACAGACGAAUUUUGUUGAUGACACAAUACUUUUAGAUAGCGUGGUAGGAUUUUGAUGUUGUAGGCAGUAAGUGAGUUUUCACCUUGUAUUUGUAGUGAUGAGCAACUCAACACUAGAAUUUACAGGAAGAAAUAUUAAAGGUAGAAUGGCUGAAUGGCAACAAGAAAUUGCCUCAUUCUUGGUUCACUGUGGCCAUUUUCGCAAACAGUUGGGGAUUGUUUGUUGGCUAUUGAGAAAUGCAAAAUGUCCUCGAUGAACUGUGCCAUCUGUUGCACUGUUCAUAUGAGCGUUAAUUGGUACAAAUUUAUGGUGCUCAUCUCCUCAUUUAGUUAUCAAUUAAACAGGACAGUCUGGUCUGCAUGAAGUUUGAGCCUUUGAAUUGUACAAUAAAAAUGCAUUGCAUCAUCCAGCUGGAAUUGCAUCACUCAGCUAGAAUUACAUCAUCCCAUAUUUGUCAUACUCUCCAUUUUUCCUGAGAUCUCUCUCAUCCUCGGUGGCUAUAAGAAGAGAAGAUGCUCACAAAUUGUGUUCUGUUCUGUAUAAUAUCCUCUGAACUGCUCUGCUUCCUUCAACGUUAUUCUGGAGAAGAAAAUGGGGGUCCUCAAGGUGUCAAGCUUGUGCUUCCUGCUGAUCAUGCCACUCCUGUUAACUUCAGGUGUGUUUGCAGGGACAGUGAGGACAGAAGGCUGCGGCGACACCUUCUUCAGCAGGACGUACAAGUCGCUGUUCUGCAGGAAAGGGCCGUGCAGGGAGCACUGCGACAACGAGGGCGCCGAUGGUGGCUAUUGCAUCUUCUUCUACCUCUUCGUCCGCUGCAUCUGCAACGAGAAAUGCAGCUCAAAAUAGUGGAUCCUCCUCAUCCUCCUCCUGCUGCUGCUGGUGAUGAUGAUAACUGAUGUUUCAGUUGAUUGUAAAUAAAAAAGAUCAGGAAGAGGAGAAAUUAUGGUAAUGCGUGCAAUGACAGGAUGUUGAACUUGAGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.69%
ME_num:
MEP:
87.6%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.95
Avg Expression:
126.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.52605239814864 | 1.20961318720759e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.50885883056863 | 4.8414629587981e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.13429553398383 | 8.2311094446854e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.49374684305482 | 1.72155438152102e-08 |
| 5 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.40258383503278 | 5.6937591219483e-16 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -6.75736988448082 | 0.00749265715030569 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.08530342345367 | 3.9510729749488e-16 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.81495504594071 | 1.81504793906183e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.18606842652643 | 7.14264593367514e-09 |