Chr:
Chr12
Start:
24327489
End:
24330009
Strand:
-
Ref_name:
LOC4352657
Sequence
(XR_001541939.2):
GGAAGGUGGACGUCCUCAGAAAACCAUGACGACUCAAUGGCGGGAAGCUAUCCUUGGGAUCACAAUGGAUGGUGGACAGAACCGUCGUUGUUUAAUGUGAACACUGGUAUUAAAACUUGAUCAAUCUAUGCUAGGUCUCAUGCUUGUGAAAAGAUUUGCAAAAGCUUGCUUUACGCAAAAGAACCUGGAGCCCUUCCUUGAAAUACCCUCUAUCAUAUGCAUUGUUGUUGUGGUGGCUUGCUGAGUACGGUUGGUACUCACCCUUGCUAUUUAUAUAUCUUUUAGGAGAGUGUUGAAGAGAAGCCCUUGUCGAUACGCUUGCGUAUCCAACAAGAUGAUCGGAGUGCGGUCUUGUUCUAGGUCUCGUUCCCCAGUCGACUGCCUGUGGCAUGUUAACCGGGCCCUUAUAUUAUUUUGUCUUCCGCUGUUGUUCUCUGAUAGUUGUUGGCCUACCUGGCCCUAACAUAAACACAGAAGAUUUCCGAUUUCCAAAAUCGGGGGUCUACACGCCAACGAAGCCAUCCCCUCGGCUACUGCUGCCGCCGUGUCCCUAUGGCCAGAUCGGGGAGAGGGAGGGGAGGGGAGGGAGGGCGUCACCGGUCUCCAACCAUCGCGCCACUGGAUCCGUCCCCCGUCACCAUCACCGCCGCCGCCUUGAGGCUGGAGGAAGCCACUGUCGCCUAGAGGGGAGGAGAAGGCAAUCGCACCUAGAUCUGAGAGAGGGAGGGGAGGGAGGGCAGGGUCACCGCGGCCCUCCGACGGCUAGAUCCACCGCUCGCGCCCCUCCCGCUGCCGGAUCCGCCGCCUGCGGCCCUGCGACGGUCAGAUCCACCGUGCCUGCACCCGCACCCGUGCCCCUCCCGGCCGAGGAUCACGGCACCCCUCCUGGCCCCUCCUGGUAGCCGUCGUCACUAUCGCUAGUCCGCCGUGUUUUCCAACACUGAGGAAAGGCUGGAGAAGAAGAGGAGGAGAUGGAAUGGGAGAGGAGGGGAUAAGGAAUGGGAAGGGAUAAAAUUAGUGGAGAUUUUAAUAUAGAGAAUAUUUUUUCGUAGUCGGUGCUCGUUAGCUACCACCAGCAAAAAAAUAAUUUUUCGCUGGCGGUUGUUUAAGUGGGCCGCUAGCAAAAAUAGCUAUAUUUUCUCUGGAGGUCUACGUAACCCAACCGCCAGUGAAAAUUGAUUUUCGCUGGCGGUUUUUAGCCCCUUACCCCUCGUUACAAUUUCACAGGCGGGAUACACAAAAAACCGCCAGCGAAGAAAAUAUGGUACCGCCAUGAAAAAUCUAUUUUGCAGUAGUCUGCUGAUCUUGAAGACUGUCACGCCUCUGGAGAAGAAGAAACUGGUUGCUAGAAUCAUACCAAGAACAAAAAUAUUUUCACUGAAACAUUUGAGGUAAAUAAAAAAUUAAUGGCCUUUGAUUUUUUACUGCUCUUUCUUUAGCAGGGUGCGUGAGGUGUGUUUUGGUUGUGUGCACUUUGUUGUGCGGAGCCCAUGAGUGUUCUCAGAAUUUUGAGAUUAGUAAAGCUUCCAUUACUAAAAAUAAGAUAAAAUAAAUAAAUAAUUAGUGUCUCUCUGCGGCCUUUAACUCUCCUAUCCCUUGCACCCCUGGUGAAUAUACCUGGGUGAGUUUUGCAAUGUCAGAUAAUACAUGAACGAUCCAGAUUGAUGUAUAUCCCUACCCCUGAAUGCAUGCUGGUGUCCAGUGCAAAAGCUGCUCAUCUUUACUCCCCUGAAGCAGCAUGGGGAAAAUAUCCUUUACACCUAGGUACCAUGGUAGUAUGCAUGCGGUUUAAAUAGUUAUAUAAAAUUUCAUACAAUUUUGACGACAUUAUGAGAAUAUAAAACAGUAUGCAAAUAUGCAAGUCCAGGUAGCGUGAAACCAAAUGGCCCAGUACAGCACCUGCGGCAAGCCAUGUUCCUUGCUGCACAGGCUUCCUCCAGGGCUCCCCCAUCGACUCGGCAGAUCGAAUUCAACAGGGACUUUCUGAAGCUUGUCGAAUUCAAAUUGCAGCCACUGAAGGAUGCAACUGUUAGUGACUACCACACAUCCACCACGCAGUGCCGUUUUUGCCAGAUUUUGGCUCAAUGACUAGCUGAGGCACAACAACUUCCAUUUAAAGCAUUCAUACAUUUCCUGAUUCCUCCUAGGCCAAGCUGCUGUCUGCACUGAAGUGGCUUCUAGCUCCUUGAGAGUUGAGACGACAUUGUUCAUCUAGAUCUCUCUACCGUUAGCAUUAUAUUUCUUUGUGCUGCAUAGGUUGCUCAUGGAUAGAUGCGUAUGUAGACUAGGAGGAUAUAUUUAUAUAUGAUUUGAUGUUUGGCAUAAGGAAGAUGCGUUAGCCAUCUAUUCAACCAAGCCAUCUCAGUGAAGGAUCUAUAAUAUUUAUGGUGUGAUCUGUUUAACUGUUUUGCAAAGUCACAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.01%
ME_num:
MEP:
9.76%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.98
Avg Expression:
21.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.19305367938052 | 4.3515024072518e-05 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 5.88720315672187 | 1.72957107875439e-50 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 4.80130273564716 | 1.44173860503878e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.40573637597051 | 1.93331331476225e-05 |