Chr:
Chr11
Start:
28722618
End:
28724244
Strand:
-
Ref_name:
LOC4351185
Sequence
(XM_015762245.2):
GAACAGAGAGCUCAUGCGUGCUAGCUAAGCUCCGGAUUACACCCACCCGCCGUGGAUUGCGAAUUGCUACUACCUAACGAUCAAUCGAUCUGUCCAAAUGCUAGCUAGUUGUUGCAAAUUUUGCUAGCUUAGCUAGAGCUACUACUACAUGUAUAUAUAUGCAAGCUCAUCUGCACCUAAUUAAUCUCAUCACCAUCGAAUCAUCAGCAUACACACGAUGGCGUCCCAACGCCGGCGAUCAUCUGCCACCGCCGUCCUCCUCUCCUUGCUACUGCUCCUCCAGUUGGCCGCCGCCUAUCCUCAAGGAAAGAGGCAGAACGUCGCCGUCUUCUGGGGCCGCAACAAGGCCGAGGGCUCGCUCCGGCAAACCUGCGACACCGGCGACUACAACAUCGUCAUCAUCUCCUUCCUCAGCGUCUUCGGCCACGGCAAAUACUGGCUCGACCUCUCCGGCCACGACCUUCGCGACGUCGGCGCCGACAUCCGCCACUGCCAGUCCAAGGGCGUCUACAUGCUCCUCUCCAUCGGCGGCGACGGCUACCAAUACUCCCUCCCUUCCUCCAAGUCCGCCGCCGACGUCGCCGAAAACCUCUACUACUCCGUCCUCGGCGGCGACCGCCCCGGCGCCUUCCACCCCUUCGGCGACGACACCAUCGUCAACGGCGUCGACUUCUUCAUCGACAACGGCCCAGCCGACCACUACGACGACCUCGCCAACCGCAUCAACGACUACAACCAGAACAUCCGCGACCCCAUCGGCAUCAUGCUCACGGCGACGGUGAGGUGCUCCUACCCUGACCCGAGGAUGAAGGCGGCGCUGGACACCAAGCUGUUCCGGCGCAUCCACGUUCGCUUCUACGACGACCCGAGCUGCUCCUAUAACCACGCCGGGCUCGCCGGCGUCAUGGCGCAGUGGAACAAGUGGUCGGCGACGUACCCCGACGGGCAGAUCUUCCUGGGGGUCGUCGCGGCCAACUUGACGGGGAAGAACGACAUGGUCGCCGUCGGCGAGCUCCGCGACAAGCUGCUGCCGGCGGUGCAGAACACGGAUACGUACGGAGGAGUGAUGCUCUGGAACAGCUACUACGACUCGCUCACUCACUACGGCCGAUACGUCAAGGACUUGGCUUGAUAUAAUUAAUUAAACUCAAAUCAACCAAUAAUUACUUGAGCCCGUGCAUGCAUGCAUGCAGCUCAAUCACUAUCUCAGUAAUUACGGCGUCAUGUGUUUGAUAUAGGAAAGUAAUCCCUACGUAGGCCAUUCUCAACCCAAUGACUAAGAUGGUGUCUAUAGCAUUAAAUAAGGUGCCACCUAGAAUGAAAAAUGAUGUGACAAGUAAAUAAAUGAGGAAAGAGAAGGAAAUCAUGUCUUGCAUGAGACAUGGUUUCUACACAACAUCCAAGACAUCAUGUGAGAUAAUGAGUAUUAAAUUUAAGUAUGGAAUAGUAGUGUUUGCAUUGGAAGAGUGGCGUCUAGUACUAGUUUCUUGAUGAUGUGGAGUUUAUGAAAAUCAUGUUUUGGGUUGGGAUGUUGUUUUUCUUUUGACCUAGCUUGCUAGCGAAAGCUAGUGUUAAUUACAUUUUUAAUUUGUCAUAAAUGCAUGUGUGAUCGAUGUGUCCUUAAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.49%
ME_num:
MEP:
44.51%
HE_num:
HEP:
24.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.91
Avg Expression:
195.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.38265381189887 | 2.13880864826028e-54 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.74234406725286 | 5.45508126100101e-90 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.99528822077779 | 0.00104735205168814 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.17009911534002 | 0.0398295733012494 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.48748646208445 | 1.01843988959273e-69 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.15394499008897 | 5.71256417392451e-106 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.84297840493104 | 8.36014573264188e-123 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.57066638186939 | 1.05639330083594e-14 |
| 9 | Azucena // root // control--/--Azucena // root // Al | -1.37151181412032 | 0.013036012528827 |
| 10 | AzuNIL // root // control--/--AzuNIL // root // Al | -1.32094534390038 | 0.0104114683642866 |
| 11 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.04778650558336 | 7.74013287325869e-15 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.8930294570349 | 5.52124506064204e-23 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.11360563815501 | 1.48032905093367e-29 |
| 14 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.04753122639106 | 2.11624076662054e-05 |
| 15 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.54840094649334 | 0.000165599590018412 |
| 16 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.33448662845114 | 0.0383508659781322 |
| 17 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.62714002530631 | 6.19184162262013e-05 |
| 18 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.77954554254557 | 0.000296514281270519 |
| 19 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.33869960624039 | 9.79150043811602e-10 |
| 20 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.66549757434612 | 0.0374570173994449 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.65672235594359 | 4.20820411052802e-15 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.70791093356023 | 0.00163716001039153 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.34430018415043 | 2.49140813690417e-09 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.08412097900082 | 5.53410244192151e-53 |
| 25 | 9311 // leaf // control--/--9311 // leaf // salt | 2.57273207628261 | 1.17116275169379e-14 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.8700589226062 | 9.07121692764653e-91 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.489808241679 | 0.00040332721822876 |
| 28 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.41062435094235 | 1.03604200925361e-11 |
| 29 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.53443850885838 | 0.00192705549417178 |
| 30 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.10185287858175 | 4.73417374822904e-06 |
| 31 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.59620081793495 | 0.0242789310222188 |
| 32 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.26362221100496 | 0.00142866547060425 |
| 33 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.0690373106204 | 1.54664303984138e-07 |
| 34 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.24777466398486 | 0.00146612517963692 |
| 35 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.24761605780428 | 0.00147922064694932 |
| 36 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 8.52926111711683 | 7.97182336956817e-37 |
| 37 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 9.02940275184126 | 4.34071904847253e-09 |
| 38 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.16445580654034 | 4.15922826506968e-269 |
| 39 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.99899825126065 | 5.20547329844737e-11 |
| 40 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.4048824054323 | 1.92725825433334e-08 |
| 41 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.67127784641398 | 4.85739035608749e-49 |
| 42 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.24227832032467 | 1.04396806914523e-29 |
| 43 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.58669769052089 | 5.80856768135651e-19 |