Chr:
Chr11
Start:
27723757
End:
27726547
Strand:
+
Ref_name:
LOC4351136
Sequence
(XM_015761637.2):
AAGUUCGAAGAAAAAGUUUGUAACUAAACUUGGCCUAGGUUGUUUUUUUUGGAUGGCGUAGGUUGUUUUUUUUUUUUUUAUGGAGGGAGUACGUCACAUUAAAGUGCCCAACAGCUGCUCAAAUGUCCCCGUCGUCUAUUCUGAACAGAACUUGUGGAAUGGGUGGAUGGGCAUAAAGACAAUGAUUUUGACCAAACGCAGAGGGGAAAAUAUCGGACUUUGGAAGCUGGAAAUGAUCCCCAACUCUGACCGCUCGGAGAGCCCGCUCAUCCUAACCUGAUCUGAUGCCUUCAGCUUCUAGCAGUACGUAUGCCUUGCAAAUCUGUAACAUAUACGCACUUGAUUUGUCUUGAGAGUAAUAUCUAUGGAGGGCGCCAUGGUCAGCCUCCCCGGGAGGCUGGAGGAGCUAGUGCGUCGUCACGGCAGCAAGCUGCCCAAGGGUGCAGAGGAGGAGAUAUCGCUCAUCAAGCAAGACCUCGAGAAAAUAAUAUCCGUUCUCCAUGGUCACAGCGAGCCAAAACUGGAGGGGCAGGCCAUGGUGGUGAGGUGCUGGAUGAAGGAGGUGCGCGAGCUCUCCUACGACAUCGAGGACUGCAUCGACCACUACGAGCACGCCUCAGCUUGGUCCAGUAUUCAUCGUAGUAAGAUCACUCGGCGGCGAUGGAGUUGGACGAGGGGCAAAAGGACCCCUCGGCUCCCUGAGAGGCUGAAGCAGCGGCUAUGGAUGGCGAACAAGAUCAGAGAAUUCAGCACUCGCUCGCAGGAGGCGCUUCAACGCCACGCCAUGUACAACAACCUCAGUGGCAUCGCCAGUACUGCUGCUUCUUCUCCAUGUGAUGCAUCUUCUAGCUCAUCUUGGCAUCCUGGACAGGAUGGGAAGGAGAAUGGUAAGGUCGGUAUCGACUCCUCUGUGCCCAUGCUCAAAGGUUGGCUGACUGAUGGAGAGAAGCUCAAGGUGGUGUCCAUUGUGGGAGUCGGAGGAGUCGGCAAGACGACGCUUGCCAACGAGCUGUACCGCAAGCUUCAAUGGCAGUUCGAGUGCCGGGCAUUUGUGCGCACAUCGCAGAAGACUGAUAUGAGGAGGAUUCUCAUCAGCAUGCUCUCGCAGGUUCGCCCGCAGCAGCCACCUGAUAAUUGGAAGGUGAAUGUAAGGUGUACAUACACGCCUGGUCGCUCUGCCCGGGGGCGACGCGGGCGGCGGAACAAGCCGCGCCACCCCGUCCCUCUCCUCCCCUCAACCACCUCGCCGCCGCCUGAGCCGCCUGAGCUGAGGCGUGCUCGUAGUGGUCGAUGCAGUCCUCGAUGUCGUAGGAGAGCUCGCGCACCUCCUUCAUCCAGCACCUCACCACCAUGGCCUGAGCCGGCUUUGCCGGCUGCUGCAAGGACGGCGGCGGCGGGGCGCUCUCUCCCUCACUCGUGGUCUUCACGGUUGGAGCGCCAGCAAGAUGGAGCGGAGGGCAUCGCGCCAGCAUCGUGGGAGGCCGCCGCCGGCGUCCAGAUCCGGCGCCGGGAGGCACGGAUCCGGGCGCCCCAUGGCCGGAUCUGCUGCUCUGGGCGGCAAGUUGGGUCUCCGGGCGGCGUCGUCGGUGUGGCUGGCGGCGGGGCCGAGCACGAGACGCCCGGUGGGCGGCGUCGUCGGCGUGGUUGGCGGCGGGCCGGAGGAGGCGUCGGCGUGGACGAGGUUUUGGCGGCGGCAUGCAGGCUGCUGGCGACCCCAGCCGGCGGAGGCAGAGGUAGAGGACGCCGGUGCCGUGGGGGUUUGGGAGACGAGGUGGCUAGAUCCACCUCCCCUGCCCAGACUCAGCGUCACAGCGGCGCUUGUUGCAGCGGUGGUGAGGCGGCAGGGUGCGGCUACGUGGAGGAAAGGGCGACUCCCGUGUGGCGACGGCGGCGGUGUCUGUGGCGUCUGGCGGUGGCUGUGGCUGUGGCGGCGGCCGCCGCGGCUGCUGUGGCCGCGAUGACAACGACAGCAGCGGCUGCUGUGGCACGGUGGAAGGAGGCACGGUGGUGGUGCGUUUCGGUAGCAGCGGCUGCGGUCGCGGUGAUCGUGGUCACCGGAGACAUGACGGCCUCGACGGCUAGCCGAGGGCGUGGCAGACGGCUGCAUCUGGCUGGCGCGGCAUCGUUUGGAGGAGGGGUCGGAGACUAGGGCUGUCAACGAGACGAGCUCGAGCGAGCUCGUCUGCCCAAGCUCGAGCUCGACACAAGCUCGAGCCAAGCCUAUUGCACCUUCGAGCUUUUAGGCAAGUUCGGCUCGAGCUCGAGCUCGGUGCCGAGCUCGGCCAUAAGUAGUAUAAUAUAUAUUUUAAUAAUAAUCUCUUGAUAAGUAUAAUUAUUUUCUAGUAAUCACACUAAUAAAAGAGUAGAAAAUGAUUAAAAUAAAUAUAUUGUGCUAACACAUGCUAAUUUAUUGUGUAAAUAGAUACAAUUAUAUAUUUAUCUAUUAGUUUAUUAUAUUAAUAAGGUGAACAUGCAAUAUAAACUAUACACAGCCAAGCUCGGUCAGGCUCGGUAGAAGCUCGAGCUCGGCUCGGUAAAGCUCGAGCUCGGCUCGGUAAAGCUCACGAGCUUUUGCUCAGGCUUGAGUUCGGCUCGUUUGGAGCUCGAGCCGAGCUCGAAUCGAGCCUAGGAUGAGCCAAGCUCGAGCUGCUCGCGAGCCUCGAGCUUU
Sequence
(XM_015761636.2):
GUUCGAAGAAAAAGUUUGUAACUAAACUUGGCCUAGGUUGUUUUUUUUGGAUGGCGUAGGUUGUUUUUUUUUUUUUUAUGGAGGGAGUACGUCACAUUAAAGUGCCCAACAGCUGCUCAAAUGUCCCCGUCGUCUAUUCUGAACAGAACUUGUGGAAUGGGUGGAUGGGCAUAAAGACAAUGAUUUUGACCAAACGCAGAGGGGAAAAUAUCGGACUUUGGAAGCUGGAAAUGAUCCCCAACUCUGACCGCUCGGAGAGCCCGCUCAUCCUAACCUGAUCUGAUGCCUUCAGCUUCUAGUACGUAUGCCUUGCAAAUCUGUAACAUAUACGCACUUGAUUUGUCUUGAGAGUAAUAUCUAUGGAGGGCGCCAUGGUCAGCCUCCCCGGGAGGCUGGAGGAGCUAGUGCGUCGUCACGGCAGCAAGCUGCCCAAGGGUGCAGAGGAGGAGAUAUCGCUCAUCAAGCAAGACCUCGAGAAAAUAAUAUCCGUUCUCCAUGGUCACAGCGAGCCAAAACUGGAGGGGCAGGCCAUGGUGGUGAGGUGCUGGAUGAAGGAGGUGCGCGAGCUCUCCUACGACAUCGAGGACUGCAUCGACCACUACGAGCACGCCUCAGCUUGGUCCAGUAUUCAUCGUAGUAAGAUCACUCGGCGGCGAUGGAGUUGGACGAGGGGCAAAAGGACCCCUCGGCUCCCUGAGAGGCUGAAGCAGCGGCUAUGGAUGGCGAACAAGAUCAGAGAAUUCAGCACUCGCUCGCAGGAGGCGCUUCAACGCCACGCCAUGUACAACAACCUCAGUGGCAUCGCCAGUACUGCUGCUUCUUCUCCAUGUGAUGCAUCUUCUAGCUCAUCUUGGCAUCCUGGACAGGAUGGGAAGGAGAAUGGUAAGGUCGGUAUCGACUCCUCUGUGCCCAUGCUCAAAGGUUGGCUGACUGAUGGAGAGAAGCUCAAGGUGGUGUCCAUUGUGGGAGUCGGAGGAGUCGGCAAGACGACGCUUGCCAACGAGCUGUACCGCAAGCUUCAAUGGCAGUUCGAGUGCCGGGCAUUUGUGCGCACAUCGCAGAAGACUGAUAUGAGGAGGAUUCUCAUCAGCAUGCUCUCGCAGGUUCGCCCGCAGCAGCCACCUGAUAAUUGGAAGGUGAAUGUAAGGUGUACAUACACGCCUGGUCGCUCUGCCCGGGGGCGACGCGGGCGGCGGAACAAGCCGCGCCACCCCGUCCCUCUCCUCCCCUCAACCACCUCGCCGCCGCCUGAGCCGCCUGAGCUGAGGCGUGCUCGUAGUGGUCGAUGCAGUCCUCGAUGUCGUAGGAGAGCUCGCGCACCUCCUUCAUCCAGCACCUCACCACCAUGGCCUGAGCCGGCUUUGCCGGCUGCUGCAAGGACGGCGGCGGCGGGGCGCUCUCUCCCUCACUCGUGGUCUUCACGGUUGGAGCGCCAGCAAGAUGGAGCGGAGGGCAUCGCGCCAGCAUCGUGGGAGGCCGCCGCCGGCGUCCAGAUCCGGCGCCGGGAGGCACGGAUCCGGGCGCCCCAUGGCCGGAUCUGCUGCUCUGGGCGGCAAGUUGGGUCUCCGGGCGGCGUCGUCGGUGUGGCUGGCGGCGGGGCCGAGCACGAGACGCCCGGUGGGCGGCGUCGUCGGCGUGGUUGGCGGCGGGCCGGAGGAGGCGUCGGCGUGGACGAGGUUUUGGCGGCGGCAUGCAGGCUGCUGGCGACCCCAGCCGGCGGAGGCAGAGGUAGAGGACGCCGGUGCCGUGGGGGUUUGGGAGACGAGGUGGCUAGAUCCACCUCCCCUGCCCAGACUCAGCGUCACAGCGGCGCUUGUUGCAGCGGUGGUGAGGCGGCAGGGUGCGGCUACGUGGAGGAAAGGGCGACUCCCGUGUGGCGACGGCGGCGGUGUCUGUGGCGUCUGGCGGUGGCUGUGGCUGUGGCGGCGGCCGCCGCGGCUGCUGUGGCCGCGAUGACAACGACAGCAGCGGCUGCUGUGGCACGGUGGAAGGAGGCACGGUGGUGGUGCGUUUCGGUAGCAGCGGCUGCGGUCGCGGUGAUCGUGGUCACCGGAGACAUGACGGCCUCGACGGCUAGCCGAGGGCGUGGCAGACGGCUGCAUCUGGCUGGCGCGGCAUCGUUUGGAGGAGGGGUCGGAGACUAGGGCUGUCAACGAGACGAGCUCGAGCGAGCUCGUCUGCCCAAGCUCGAGCUCGACACAAGCUCGAGCCAAGCCUAUUGCACCUUCGAGCUUUUAGGCAAGUUCGGCUCGAGCUCGAGCUCGGUGCCGAGCUCGGCCAUAAGUAGUAUAAUAUAUAUUUUAAUAAUAAUCUCUUGAUAAGUAUAAUUAUUUUCUAGUAAUCACACUAAUAAAAGAGUAGAAAAUGAUUAAAAUAAAUAUAUUGUGCUAACACAUGCUAAUUUAUUGUGUAAAUAGAUACAAUUAUAUAUUUAUCUAUUAGUUUAUUAUAUUAAUAAGGUGAACAUGCAAUAUAAACUAUACACAGCCAAGCUCGGUCAGGCUCGGUAGAAGCUCGAGCUCGGCUCGGUAAAGCUCGAGCUCGGCUCGGUAAAGCUCACGAGCUUUUGCUCAGGCUUGAGUUCGGCUCGUUUGGAGCUCGAGCCGAGCUCGAAUCGAGCCUAGGAUGAGCCAAGCUCGAGCUGCUCGCGAGCCUCGAGCUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.02%
ME_num:
MEP:
45.93%
HE_num:
HEP:
27.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.78
Avg Expression:
26.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.70995151477417 | 0.0140089002452603 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.34765457947165 | 0.0407406607213938 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.65940690470121 | 0.0157423130768853 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.92035956118365 | 0.00127770705996871 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.26268717724126 | 0.00771213839933297 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.32603176051383 | 6.53349893169395e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.49638087335817 | 0.0494467292680326 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 2.1298855880324 | 0.000600690890770068 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 2.61964573250846 | 1.49661976890593e-06 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.0140892527176 | 2.18051957368007e-13 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.35082833191787 | 2.77818431358178e-07 |
| 12 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -3.7021317519309 | 1.27036379764228e-09 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.73668806422352 | 0.0058052233412658 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.86862124068821 | 0.00242018571294423 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.90260397486498 | 0.000242233566343579 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.65931379699806 | 0.0152395188842226 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.59397067126884 | 0.00624542662333958 |