RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS4350883

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

23372993

End:

23378847

Strand:

-

Ref_name:

LOC4350883

Sequence
(XM_026021547.1):

UGAAAGUAUAUUUAACAAUAAAUUAAAUGAUAUAAAAAUAAUAAAUAAUUACUUAAAUUUUUUGAAUAAGACGAAUGGUCAAACAUGUACUUAAAAAGUCAACGGUGUUAAACAUUUUGAAACGAAGAGAGUAUAUGUAUAGCUGAGCCUGCUAUUAUACCUGCUCGUCCCCAUGGAGUCCUCUGCAGGCUACAGUGCACUCCAGCGUCCGUUGGGUUGGGCGUAGUGCCGUAGUGUAGCUUCAUCUCGUCUCGUCAUCGAGGUCGCCGGCGGUGAGGGGCAGGCAAAGAACAAGAUGGAGCUCGCCGUAGGCGCCUCGGACAGCGCCAUGAGGUCGCUGCUGGGAAAGCUCGGCAGCCUCCUGGCCCAGGAGUACACGCUCAUCAGCGGCGUUCGCAGCGAGAUCCAGUACAUCAAGGACGAGCUGGCCAGCAUGCACGCCUUCCUCCUCAACCUCGGCCACGCCGCCGGCCACCACCAUGACGAGCAGACCCGGGGACUGGAUGGAGCAGGUGCGCGACGUCGCCUACGACAUCGAGGACUGCAUCGACGACUUCAGCCACCGCCUCGGCGGCCAGCCACGCGGCGAGGGCCUCCUGUCCGGCCUCCGCCGCGCGAGGUACGCCGUGGCCACGCUCUGGGAGCGCCGGGGCAUCGCCGCCAGGGUCGUCGACCUCAAGAACCGCGCGCAGGGCGUCGGCGAGCGCCGCACGAGGUACGGUGUGAAGGACCCCGGCCGGCCGGACGCCGGGAACGGGAAGGCCGCCAGAUCCGCCCCUUCCUACCACGUCAACGACCGCCCCCAGCCUGGUCCGCAGCUCGUCGGCGCCGCGGAGUCGGUGGGGAUGGAGGACGCCAUCGGCAAGCUCGGGGCAUGGCUGACCGAGGGGCUGCCCGACCUGAGGGUCCUCGCCGUCGUCGGAUUCGGCGGCCUCGGCAAGACGACGCUGGCAUUGGCGCUGCACCGCAAGUUCGGGGAGAAGUUCGAGUCCCGGGCGUGCGUGCAGGCGUCGCAGAAGCUCAAUCUCGCGGCGCUGCUCAGAAGCAUCCUCAGGCAAGUCAUGCCUCAGGUCCCUGACAAGGAGAGCACAGAUGGAGACUCUCUUGCAGGGAUCGAGAGAUGGACAGACAAGCAGCUUAAGGAGAAGCUCACAGCACAUUUGGAACAAAAGAGGUACUUCCUCUUAGUAGAUGAUGUCUGGUCUGUAUCUUCAUGGGAAUACAUCUGGGGAUCUUUGCCCAAAAAUAACAAUGGCAGUAGAAUAGUGGUGACAACAAGGUUCAAAUCUGUAGCUGACGCCAGCACUCAUCAGCAAACAGGUGACAUCCACAUGCUAGAUCGGCUUUCAGAUGAGAAAUCAAAACGACUGUUCAAUGAAAGAAUCUUUAGUGGUGAUGAUUCAUGCCCGGACGAGUUCAGGGAAACCAAGGACAAAAUUCUGAAGAAAUGCGGUGGUCUGCCACUGGCAAUAGUUGCGGUGGCAGGACUUCUGGCCAGAGACCCAAGGUCAAAGAGCCAUUGGACAAAGGUGCAAGAUUCUUUUAAGUUCAGAGCUGGAGAUGAAUCUUAGGCCUUGUUUAGAUGGGACUAAAACUUUUAAGUCCCUAUCACAUCGGAUGUUUGAAAAUUAAUUAUAAAUAUUAAACGUAGACUAUUAAUAAAACCCAUCCAUAAUCUUGGACUAAUUUGCGAGACGAAUCUAAUGAGCCUAAUUAAUCCAUGAUUAGCCUAUAUGAUGCUACAGUAAACAUUCUCUAAUUAUAGAUUAAUUAGGCUUAAAAAAUUUGUCUCGUGAAUUAGCUUUUAUUUAUGUAAUUAGUUUUGUAAGUAGUCUAUAUUUAAUACUCUAAAUUAGUGUCUAAAGACAGGGACUAAAGUUAAGUCCAUGAUGUAAACACCACCUUACUCCUGAAGGAGUAACACAGAUACUCAAUCUCUGUUACAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

264

LEP:

53.66%

ME_num:

227

MEP:

46.14%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.85

Avg Expression:

10.11

Tip: OSA-PHAS4350883 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.213798287675370.00560481574273403
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.131850422457350.0265451348481798
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.703065613486950.0435234205020715
4WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h4.778686700117630.00153871907386096
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.211217998510890.00286750909426364
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.983351058434760.00822379566001155
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.6877016620881.29904399674905e-05