RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS4350347

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

11684713

End:

11705940

Strand:

-

Ref_name:

LOC4350347

Sequence
(XM_015761825.2):

CACACACUGUAUUCUGUUUCCAUGUUUUUUAAAAAUACCGGUCAGUUUUUUUCCUAGUAAAAAAAUCAAUAAUGAUAUGUUUUUUUCCUAGUCAACCCGAUCGAGAUCCCAUCCCGUUUAGAUCGGGAUCAGGUCGAUCCCCUUUCCUCUCCUCUUUCCUGUCCUCGUUUCCUCUCCUUUCUCAUCGUAGCCUUCUCCCUCUCGGCCAUCGGCGCCUCCCCCUCAACCUCACCCUCCACCCCUCCCUUCUCAUCGUAGCCUUCUCCCUCUCGGCCAUCGGCGCCUCCCCCUCAACCUCACCGGCGCCUCCCCCUCAACCUCACCCUCCACUCGUGCCACCUCCCUGCCUCAACCACGACGUCCGACGUGCUGCCCCCAACUCCACCUUGGCCUCCGCCCUGGGCCACCUCCCUGAGUCGACUGCAUCCUCCAUCAGCGUCGCCGCCAACUCAACCUCAGCCUUCUUACGGCGGCCAUGGAGGCAAUGGCCAAGGCGGCAGUGGCCGCGAUGGCGUUGGCGAAGGUGGCCAUGGCGGUGACAGCCCCGCGACAGCUGCGACGGCCAAGGCGUGCAGGCGGCCACGAUACUGGUGAGCAGUGGUAGGCGUGUGGGCGGCGGAUCCGGCGGUGGGGAGGCUCGAGGGCGACGGUGGGGCUGGUGGGCAGUGGAUUCGGUGUUGGGAGGCGCGCAGGCUGUGGCGAGGAUGGUGGGCGGCGGGGGAGGUGGGCGGGCGGUGGCGAGGCUGGUGGGCGGCGGAUCUGGUGGUGAGGGAGGCUCAAGGGCGUGUAUCCGGCGUCUUAGUUCUAGCCGACUUCCAAGCAUACUUCAUCCCGCCUCCCGAAGUUACCGCCGUCGCCUACUUCCUCGACAUCGCCGCUCGUGGGAGCCGCCGCUGCGAGGAAUUGCCUCAUGGUUUGUCGCCUUCGUCGAUUUCCUGGCUCCCUCAACACCCGGACACCCAAGCGCCUUGCCGGUGAGGGCCGCCGCCAAGCUUCCGCCGCUUGCCGAGGCCGUGCACUGCCACUUGGAGCUUGACACCGCAAGUCAAAGCCAUCCCCCGAAAUCAGGCCGAACUGCUUAUCCCGAAAAUUGGGGUUUUGGGGGGCGGCGCGGCGACGGACCAGCGCGACGAUGGACCAGCGAUUCAGCGGCGACUGGAUGGCUGGCGGCGGUACAGAGAUAGCAGCUCGUUCCUUCCUCCAGUGAUGACUCCUCCCCUUCCUCCAGCGAUGGCUCCUCUCUCAACAGCAUGUGUUCCUGAAGCAGAAGUAAUCGAUUUGGAGUCGGCUGAAUGCAGGAGCGGGGCAACCAUGGCAAAAUCGACGGGCCAUAGCAGUGGAUUUCAUCCAAAGCAGCAGGGUCACAGGAAAAUCAGUUUGUCACCACAGUCCAAGGCUUUGAAGGUUUCUGGCACAAGAGGCAGCCUAAAUAAGACUGUUGCACGGGUGGUAUCCAGGUAUCGGCAAAGCAGAGUUUUAAAUAGACAGAAGAAAGACAACACUAUCUUUGGUAUCAACUGCAGGUGUCAGCCCAAAUGCGUAGUGAAUAUCAUUAAAGAAUUCGAUGAUAGGAAGAAGGAGUUGAUUGGUGAAAUUGGAUUUGAUGGACUUUUGGAUAUCAAGCUUACUAAGGUAAACAGGCAGUUUGGGGCAUGGCUACUAAGCAAAGUUGAUCCGAAAUCAUGCGCUACUGUUAAAGAUGUCAACCAGGAGUUGCCAUUCGGUUCCAAUGAUGUGAAUGCAGUUUUUGGCUUGCCAUGCUCAGGUCAACCUAUUAUCCCUUGCUCUCAAGAUGAAUUGGAUGGGAAGAAACAAAUAUUGUGUGAAAUAUUUAAGAUACCAAACUUUUCACACCUGAAAAUAUCACUCUUAAAGAGAAUCCUAAAGAAGCAGUAUGGUUAUCCCAUGACAAUAGAUGAAAAGAGGGUUUUCAUGGCGGCUUUUGUGCUUUAUGUCACAACGAAGCUUUUGGCACCGCAAUCCUGUGCAAACUUCAUAUCUCCUAGGUCUAUUAUGGCUGUUUCUGAUGUUGACAAUAUAAAACAGUACAACUGGUCCCAAUUCGUUGUAGAUGAGGUGAAGAAAGCAGCAGAAUCAAUGCCCACCUGCUUUCCGAAUAAGGCUCAACUAUCCAUUAACGGGUGUAUCAUCUUUCUAAUGGUAAAAUACUUGAGAAAUCUCCUGUUCCGGAAGGUUGGGAUCACAUGUGUUAAAACAUGUCACAUUUCUCAGUUUGAGGAUGAUCAAAUUGCUAGGAUGAUUCAACAAGAUGUAGUUAGUAAACAUAACCCAGGAUUCCCCUUCCCUCGUUAUGGGAAACUCCAGUUGAUGAAGGAUCCAAGAGAAAACAACCCCCAUGUGCCAGAGCUAUCUCCCCUAAACUUAUGCUCCUGUUCGAAGAUCCCAUCUAGAGCCAUUGAUGGCGGUAAAAAUUUAAUAAAAUUCCUGGUUUCACACUUCUCUUCGUUAGACGUACAUAGAAGUGUCGGGUCACAGGCAUACGAGGAGUUGAAAUCUUCCGUUCAGGAUGGAUUCGAUCGGAUCGAUAAGAUUUUGCCUACCAUAUCAGAUUUCGUCGACAUAAGCACCAUGCAAACUGCUAUUCACGCAUCUAACCUAUUCAAGAGAGCUUUCAAGACUAAUAUUACAGUGGCAGUUAAGAUAGUGAUAAGGGCAGCAAUAACGAAAGUUAUUGAUACCAUUGAGGAUAUACAAGGGCCUCUCCAUCCAUGGGGAGACACAACUGCCAUGGGAUACCACACACCCACAAACUACUCCACACAUGCUACAAAAGAUGCUAGUCAAUUGGACCAACCAACCAACACGGUCAAACGUUAAACGUUAAACGUGAAUAGUGUAAAACUGCACUUAUUUUGGAUGGAGGAAGUAUAUCUUUAGGCCGUGUUUAGUUGCAAAUUUUUUCUUCAAACUUUUAACUUUUUCAUCACAUCAAAAUUUUCCUACACACACAAAUUUCCAACUUUUCCGUCGCAUCGUUCCAAGUUUAACCAAACUUCCAAUUUUGAUGUGAACAAAACACAGCCUUAAUAUAUCACCAAGCUUACACUACAAAAAUGAAUAUAUCUUCAAUCACCAUGUGAAAAUAUUCCAAAAAUGAUAUGUAGAUAUAUCAGGUAACCUAAAAAUAUGUCAUUCGUUGAGACAUGUCAUUAGUUCAGACAGUAGCCUUCACUAUUUGUAAAUACAUUUCCAAAAAUAUACAUAGUUUUUCCUUAAAAAAUAGAUAGCUUCAGACAAGUACUUGCGGCGGUGUUCCAGACACAAAAACAUCCCAUGUAUGCACAUUAUUUGUGCCAUCAUAUAAUUGAUAUUUAUAUAUAUCUCCAUUCACCAAAAAAUGCAUGCACAUUAAGGCUGUGUUUAGUUCACGCCAAAAUUAGAAGUUUGGUUGAAAUUGGAACGAUGUGACGCAAAAAGUUGGAAGUUUACAUGUGUAGAAAAGUUUUGAUGUGAUGAAAAAGUUGAAGUUUGAAAAAAUAUUUCGGAACUAAGCAUGGCGUAAGGCUGCGUUUGAUACUUGGGGUUAGGAACCCAACUCGACCGCACGGAAAACGGAGCGGUCUAUUAGCGCGUGAUUAAUUAAGUAUUAGCUAAUUUUUUUAAAAAAAAUGGAUUAAUUUGAUUUUUUAAAGCAACUUUCGUAUAGAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

125

LEP:

25.41%

ME_num:

349

MEP:

70.93%

HE_num:

17

HEP:

3.46%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.59

Avg Expression:

6.94

Tip: OSA-PHAS4350347 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.097001456150915.75170310641233e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.700563613232671.97271112162573e-11
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.257879313592911.20111851791086e-27
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.534884412006342.62556249811918e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.319876548919642.77291961596135e-10
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-2.299131874569136.80444340442808e-09
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.242122287306991.52664611041212e-32
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.469582301528247.99544340716872e-09
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.272137423263392.48181606345893e-10