Chr:
Chr11
Start:
3278462
End:
3279432
Strand:
-
Ref_name:
LOC4349876
Sequence
(XM_015761796.2):
GACGCCAAUAAGCAAGCAAGCAAAGCCACAUCUUAUUGUCACUUCCAUCUCAUUCUCCUAAUUGUCAUCACUAGCUUCUAGCUAGCUUAAUUAAUUAAUUAGCCAUGGCGGAGGAGAAGCACCACCACCACCUGUUCCACCACAAGAAGGACGACGAGCCGGCCACCGGAGUAGACUCCUACGGCGAGGGCGUCUACACGUCGGAGACGGUGACCACCGAGGUGGUCGCCGGCGGCCAGGACGAGUACGAGAGGUACAAGAAGGAGGAGAAGCAGCACAAGCACAAGCAGCACCUCGGCGAGGCCGGCGCCCUCGCCGCCGGCGCCUUCGCCCUGUAUGAGAAGCACGAGGCGAAGAAGGACCCGGAGAACGCGCACAGGCACAAGAUCACGGAGGAGAUCGCGGCCACGGCGGCGGUCGGCGCCGGCGGCUACGCCUUCCACGAGCACCACGAGAAGAAGAAGGACCACAAGAGCGCCGAGGAGUCCACCGGCGAGAAGAAGCACCACCUCUUCGGCUGAUCGACCUCAUCACAACGUCGCCGGCGGCGGCGACGACCUCGCCGUACGUCGCCGGCCGCCGUGUCGUCGAUUUGUGUGUGUAAUAAUUUGUCUUCUUCUGCAUGCGUGGUGUUGCUGUUUUUCACAAGAGUCUCCGGCCUCGACCAGUGAGAGGCUGACAGGUGGGGCCGUGAGUUCAGCUUGUGUUGCUUGAUUUUCUCUGCAGCCUUGCCCUCUGUGUGUCCAAAUAAGUGGUGUGCAUGGCUCUCUCCGUGUCAUGUAUCAAUGUAUUUUUAUCUGUACUUUGUACAAGUGAAGCAAUAUUUAUCGAACCUUGACUUUCUCCAUUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.11%
ME_num:
MEP:
7.52%
HE_num:
HEP:
85.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.80
Avg Expression:
4499.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.16257194956646 | 0.00170798788676651 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.66004272507966 | 0.000464483632374284 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.32618716116215 | 0.0445329645037957 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 13.5561776787401 | 3.75891706447998e-29 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 13.0758911370542 | 5.92682353828218e-28 |
| 6 | IR64NIL // root // control--/--IR64NIL // root // Al | 1.14250475698105 | 6.58765566338822e-11 |
| 7 | Azucena // root // control--/--Azucena // root // Al | 1.47237984103959 | 2.11644639543505e-27 |
| 8 | AzuNIL // root // control--/--AzuNIL // root // Al | 1.35385007952661 | 1.08217263391953e-09 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.62479672485759 | 1.34947470020081e-08 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.65085419453737 | 2.54845619780989e-35 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.21310798375408 | 6.78347190225638e-16 |
| 12 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.84217184789022 | 4.08341919187172e-11 |
| 13 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.30721222935548 | 9.79168197551025e-22 |
| 14 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.78192288811723 | 0.000328344816291123 |
| 15 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.59991637980458 | 0.000363957732421252 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.72805546710602 | 6.61220186526523e-12 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.38815545258031 | 8.8526120851142e-06 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.4456591446268 | 4.23872626641366e-06 |
| 19 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.74972043636638 | 0.00332269598148311 |
| 20 | 9311 // leaf // control--/--9311 // leaf // salt | 1.59432636192085 | 1.43775687657672e-21 |
| 21 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -1.09899201131461 | 9.41425855510556e-13 |
| 22 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.06417425780924 | 1.11156247828204e-13 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 14.57223385095 | 7.95561177016977e-35 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.6174677314951 | 1.22272993990326e-09 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.06873467149853 | 0.00516999547331842 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.41578248681141 | 2.14579668242348e-05 |
| 27 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.07754973371288 | 1.26987385606594e-12 |
| 28 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.05803881759844 | 9.94083982044325e-07 |
| 29 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 10.4728633731288 | 1.69734389488064e-18 |