Chr:
Chr10
Start:
12996970
End:
13001207
Strand:
-
Ref_name:
LOC4348527
Sequence
(XM_015757909.2):
CCUCAAUCAUUCCCAUCCUCGUUCAUCCGUCAGUGGCCCCUCUUCCUUUUCCAUUAUCAUGAGCAUGUCUUCCCCAAAACAUCUGCUCGCCUAGAUAUACCACUUCAUGCGACCUCCGUCAUCCGGGCCAUUACUAUGAGAACUCUCUUACCUGUUCAGGAGGGACGAAACAUGGUGGGUGCUGAAAAUUGACCGCACCGAGCCGACGAGCCUGGAAAUCGAAGAUUUGGUCGAGGUUAUUGAGAAGAAGCCUCGUGAGUCUUUGCAACGCGUACAAUAUGCGAAAGCCAUUGACCACAUAAACAAUGGGUUAUCAAAUGAUAAGCAGUUAAUGGUUAUUCAUAUGGACUUGAAGACUUGAAGCUGUGAGCUGUUUCCAUGCUUGCUAAUGGUGGGAUUUGCCUCAUUAGCUCAUUCAGACUUUCUACAUUGCCAACUUACUACAACAUCGUUACCUGAUCGCACUCUAAGGGAACAAAACGAUGUUACCAGUGCAAGUAGCAGUACUAGCAUGAAUGAACCCAAAUUUGGGAUAAUAGAGAUACUGCCAAUUGUGCUGCAAAAGGGAGUGCUCAAGACUAACUGCAUAGACAGCCGAGACCGCACAAACAGAGCCCAAAUUGUGGAUGGACUAGUCGGCUUGGGGCGCCAGCUGAAGGCAUUGGUGCAGACUAAGGGUUUGGAGAUUCAUAUAGAAGAGCCCUUGUCAAGCACCUUGAUGCUGUUCUAUGAGGAAAUGGGGGAUGCAUUGGCUCUUCAGUUUACUGGCUCUGCUGCUCAAAACAAGGAGUUUUGGAAGCAAAAAGGGCAGUGGAGUGCAAUGAAUAAGCUGACCCGGAACAUCCAACAUUUUGUGAGCAAUGCUUACAUGGACAGUGAAAAGCAGAAUUCUCCAAACAUAGAAGUUGUUGAUGUUUGCAUUCUAUUUCAAAUUCUUGGGACAUUUCCAACCCCAACUGGGAAAGCCUCCAAUUUGGAGGUUUUGGCUUGGCUAGCACCCGCCAAAGGCAAGUAAUAGAAGAAACUCCACUGCUGUACAACCAUCCAACAAUCUCAAAAAUCUGCAACAUAUCUAACCACGUUGCGUGAAGGAUAUGAAACCGGUAGCAUGGAGGAAACAAAAAGGACUACUAUAAUUACUCAGCUUGUGAAAAAAAUGUUGAGAAAGUUCAUAUACUUGAGAAGUAAAGCCAGUGCCAGCAUCCAUUAUUAAAGCCCACAGAUUCGAACAAGAAGCUACUGAACUAAUGAACAAUCCAUCUUCAUUUCCUUCUGUAAUAUGCUGUGCCAACGUACCAUCUGCAACAUUGUAGUGAUACCUGCAAAAGAAGUGUGGCUAGUGUGAAAUUAUACUGGUCUAGGCAACAGUUCAUAGGAUGCUCUGCAAGGAAUAUCAUAAAAACAUUUAUCCUGGCAUCUAUGUAAAAUAGACAUGAUUUGGGAUUACUAUAGGAGAAUCUUAACAAGGAGCACAUUCACAGUCCAUUCAAGUUCAAUUCAGUUCUGGUAUUAUAAGUGGAUCUGAUGAUGGGGUUAGUGAAAGAUGCCAAUCUUCUCGGGUCAGUUGAUGUGCAUUCAGUAUAUAUGAAGAAACAUAUCCUUGUGACAUUCAAUUUGUGUAAACUCUUAGCUUAGUUGACCACAUAGAUAAAGAUGGAAUGUUAAAAGGAGUAUUUGUUCAUGAUGUAAUUGUCUCCUCUGUAAUUACAGCCCAAAAAAACGUUGUUUUUGUUCUAUACAGUCUCUUUUCUCGAA
Sequence
(XM_015757910.2):
CUCAAUCAUUCCCAUCCUCGUUCAUCCGUCAGUGGCCCCUCUUCCUUUUCCAUUAUCAUGAGCAUGUCUUCCCCAAAACAUCUGCUCGCCUAGAUAUACCACUUCAUGCGACCUCCGUCAUCCGGGCCAUUACUAUGAGAACUCUCUUACCUGUUCAGGAGGGACGAAACAUGGUGGGUGCUGAAAAUUGACCGCACCGAGCCGACGAGCCUGGAAAUCGAAGAUUUGGUCGAGGUUAUUGAGAAGAAGCCUCGUGAGUCUUUGCAACGCGUACAAUAUGCGAAAGCCAUUGACCACAUAAACAAUGGGUUAUCAAAUGAUAAGCAGUUAAUGGUUAUUCAUAUGGACUUGAAGACUUGAAGCUGUGAGCUGUUUCCAUGCUUGCUAAUGGUGGGAUUUGCCUCAUUAGCUCAUUCAGACUUUCUACAUUGCCAACUUACUACAACAUCGUUACCUGAUCGCACUCUAAGGGAACAAAACGAUGUUACCAGUGCAAGUAGCAGUACUAGCAUGAAUGAACCCAAAUUUGGGAUAAUAGAGAUACUGCCAAUUGUGCUGCAAAAGGGAGUGCUCAAGACUAACUGCAUAGACAGCCGAGACCGCACAAACAGAGCCCAAAUUGUGGAUGGACUAGUCGGCUUGGGGCGCCAGCUGAAGGCAUUGGUGCAGACUAAGGGUUUGGAGAUUCAUAUAGAAGAGCCCUUGUCAAGCACCUUGAUGCUGUUCUAUGAGGAAAUGGGGGAUGCAUUGGCUCUUCAGUUUACUGGCUCUGCUGCUCAAAACAAGGAGUUUUGGAAGCAAAAAGGGCAGUGGAGUGCAAUGAAUAAGCUGACCCGGAACAUCCAACAUUUUGUGAGCAAUGCUUACAUGGACAGUGAAAAGCAGAAUUCUCCAAACAUGUAAUAGAAGAAACUCCACUGCUGUACAACCAUCCAACAAUCUCAAAAAUCUGCAACAUAUCUAACCACGUUGCGUGAAGGAUAUGAAACCGGUAGCAUGGAGGAAACAAAAAGGACUACUAUAAUUACUCAGCUUGUGAAAAAAAUGUUGAGAAAGUUCAUAUACUUGAGAAGUAAAGCCAGUGCCAGCAUCCAUUAUUAAAGCCCACAGAUUCGAACAAGAAGCUACUGAACUAAUGAACAAUCCAUCUUCAUUUCCUUCUGUAAUAUGCUGUGCCAACGUACCAUCUGCAACAUUGUAGUGAUACCUGCAAAAGAAGUGUGGCUAGUGUGAAAUUAUACUGGUCUAGGCAACAGUUCAUAGGAUGCUCUGCAAGGAAUAUCAUAAAAACAUUUAUCCUGGCAUCUAUGUAAAAUAGACAUGAUUUGGGAUUACUAUAGGAGAAUCUUAACAAGGAGCACAUUCACAGUCCAUUCAAGUUCAAUUCAGUUCUGGUAUUAUAAGUGGAUCUGAUGAUGGGGUUAGUGAAAGAUGCCAAUCUUCUCGGGUCAGUUGAUGUGCAUUCAGUAUAUAUGAAGAAACAUAUCCUUGUGACAUUCAAUUUGUGUAAACUCUUAGCUUAGUUGACCACAUAGAUAAAGAUGGAAUGUUAAAAGGAGUAUUUGUUCAUGAUGUAAUUGUCUCCUCUGUAAUUACAGCCCAAAAAAACGUUGUUUUUGUUCUAUACAGUCUCUUUUCUCGAA
Sequence
(XM_026020677.1):
CCUCAAUCAUUCCCAUCCUCGUUCAUCCGUCAGUGGCCCCUCUUCCUUUUCCAUUAUCAUGAGCAUGUCUUCCCCAAAACAUCUGCUCGCCUAGAUAUACCACUUCAUGCGACCUCCGUCAUCCGGGCCAUUACUAUGAGGAGGGACGAAACAUGGUGGGUGCUGAAAAUUGACCGCACCGAGCCGACGAGCCUGGAAAUCGAAGAUUUGGUCGAGGUUAUUGAGAAGAAGCCUCGUGAGUCUUUGCAACGCGUACAAUAUGCGAAAGCCAUUGACCACAUAAACAAUGGGUUAUCAAAUGAUAAGCAGUUAAUGGUUAUUCAUAUGGACUUGAAGACUUGAAGCUGUGAGCUGUUUCCAUGCUUGCUAAUGGUGGGAUUUGCCUCAUUAGCUCAUUCAGACUUUCUACAUUGCCAACUUACUACAACAUCGUUACCUGAUCGCACUCUAAGGGAACAAAACGAUGUUACCAGUGCAAGUAGCAGUACUAGCAUGAAUGAACCCAAAUUUGGGAUAAUAGAGAUACUGCCAAUUGUGCUGCAAAAGGGAGUGCUCAAGACUAACUGCAUAGACAGCCGAGACCGCACAAACAGAGCCCAAAUUGUGGAUGGACUAGUCGGCUUGGGGCGCCAGCUGAAGGCAUUGGUGCAGACUAAGGGUUUGGAGAUUCAUAUAGAAGAGCCCUUGUCAAGCACCUUGAUGCUGUUCUAUGAGGAAAUGGGGGAUGCAUUGGCUCUUCAGUUUACUGGCUCUGCUGCUCAAAACAAGGAGUUUUGGAAGCAAAAAGGGCAGUGGAGUGCAAUGAAUAAGCUGACCCGGAACAUCCAACAUUUUGUGAGCAAUGCUUACAUGGACAGUGAAAAGCAGAAUUCUCCAAACAUAGAAGUUGUUGAUGUUUGCAUUCUAUUUCAAAUUCUUGGGACAUUUCCAACCCCAACUGGGAAAGCCUCCAAUUUGGAGGUUUUGGCUUGGCUAGCACCCGCCAAAGGCAAGUAAUAGAAGAAACUCCACUGCUGUACAACCAUCCAACAAUCUCAAAAAUCUGCAACAUAUCUAACCACGUUGCGUGAAGGAUAUGAAACCGGUAGCAUGGAGGAAACAAAAAGGACUACUAUAAUUACUCAGCUUGUGAAAAAAAUGUUGAGAAAGUUCAUAUACUUGAGAAGUAAAGCCAGUGCCAGCAUCCAUUAUUAAAGCCCACAGAUUCGAACAAGAAGCUACUGAACUAAUGAACAAUCCAUCUUCAUUUCCUUCUGUAAUAUGCUGUGCCAACGUACCAUCUGCAACAUUGUAGUGAUACCUGCAAAAGAAGUGUGGCUAGUGUGAAAUUAUACUGGUCUAGGCAACAGUUCAUAGGAUGCUCUGCAAGGAAUAUCAUAAAAACAUUUAUCCUGGCAUCUAUGUAAAAUAGACAUGAUUUGGGAUUACUAUAGGAGAAUCUUAACAAGGAGCACAUUCACAGUCCAUUCAAGUUCAAUUCAGUUCUGGUAUUAUAAGUGGAUCUGAUGAUGGGGUUAGUGAAAGAUGCCAAUCUUCUCGGGUCAGUUGAUGUGCAUUCAGUAUAUAUGAAGAAACAUAUCCUUGUGACAUUCAAUUUGUGUAAACUCUUAGCUUAGUUGACCACAUAGAUAAAGAUGGAAUGUUAAAAGGAGUAUUUGUUCAUGAUGUAAUUGUCUCCUCUGUAAUUACAGCCCAAAAAAACGUUGUUUUUGUUCUAUACAGUCUCUUUUCUCGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.78%
ME_num:
MEP:
21.75%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.98
Avg Expression:
83.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.03175851926731 | 0.000607139939332651 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.38464406780551 | 0.000257128679185923 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.66218421620317 | 1.22431231599738e-21 |
| 4 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.93052389952207 | 0.0404640159878193 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.67016849419703 | 9.5682204056979e-11 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.33985433346364 | 0.00578699894791314 |
| 7 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.76126571884847 | 0.00402761907372219 |