Chr:
Chr9
Start:
22905481
End:
22908780
Strand:
+
Ref_name:
LOC4347927
Sequence
(XM_015756152.2):
AGCCAACUUAAUAGCCAAUUCAUACAAUAGUUAUAUACUACACUAUUAAUAUCUGUUCCCACCUGUCAUACAUACACUGCGUCUUGGAGUCCGUGCUACAGCUGGCUACAAAUCUGUAGCCCAUUGCCCUUCUCUCUCAUCUUUUAUCUCUUUAAAAUAUGUUUGCAGCUGGCUUAUAGCCUGCUAUUGUACCUGCUCUUAGGCUGUGUUUGAGGAAAAUGAGAUAGAGAAGAUUGGGAAGAUACGCAAAACGAGGUGAGUCAUUAGUACAUGAUUAAUUGAAUAUUAACUAUUUUAAACUUCAAAAAUGGAUUAAUGUGAUUUUUUAAAGCAACUUUUCUAUAGAAAAUUUUUGCAAAAAACGCACCGUUUAGUAGUUUGAAAAGCGUGCGUGCGGAAAACGAGUGAAAUCUCCCCUAUCUCUCCUGAAAGAACGCAGCCUUAGGCUGUGUUUGAGGGAGAGGAGAUUGAGAAGAUUGGGAAGAUACGGAAAACGAGGUAAGCCAUUAGCGCAUGAUUAAUUGAGUAUUAACUAUUUUAAACUUUAAAAAUAGAUUAAUAUGAUUUUUUAAAGUAACUUUCAUAUAGAAAUUUUUUGUAAAAUACGCACCGUUUAGUAGUUUGGGAAACGUGCGCGCGGAAAACGAAACAAACAUUCCCCCAUUUGUUCUCCAAACGAACGCAGCCUUAGUGUACAUCGAAUUGUCGUCAGCAGAAUUAAUUUGAAUGAUGAUCUAUCAAUGGAUCGAUCUGAUUAGUUUAGUUGCGUAAUACGCCACAGGCCAGCAGAGUAGUCAACUGGCAGCUAACAUACGUGUCACAUGACCAGUUAGCCGCAGUAGUCUUGAGCCGCCAAUUUGGAACUCUCUUGUGGUACUAGUAUAAAUUAAUUAUAUCGUGUGGAAAUUAUUAAGAUGAGACUGCAGCAGGCCAACAACCUGCAGAAUUCUUCUUCUUCCUCCAAUUCUUCUUAGCCUGGGUUUAUUUCACGCUUUCAAUUUUAGUUGAAAUUGAAACGAUGUGACGAAAAAGUUAGAAGUUUAUAUGAGUAGAAAAGUUUGAUGUGAUAGAAAAAGUUAAAAGUUUGAAAAAAAAAUUAGGAUCUAAACACGGUGUUACGCUUUUACGCGUACAACGACCGGCCACCUGCAGUACAUGCUGACCAUGUAAUAUACUAUAAUUUGCAAUUAAGCAGGCAAGCAGGUGUAAAUAAGCUUAAUUACUAUUUGAAAAUUAUAUUAUUACUUAAUUGAAAAGAAAACAGGUGCUAGUUUAAUUACCAGCUCCUCCUCUUGACGACAGCAGCAAAGGUGUGGCCGAGGCGGCGAGGCACAUAGAUAGGGGCGGGCAAGCUUGGCUUGGAUCGAUCUUGAGUGGAUAGAUCAACUGGAAGGGCGUAGCGGCAACGGCGUUGGGCGGGACCUAAGAUCUGACAUGUGUACGUGGCGAAGGGCAAAAGUACACGGCAUUGGAAUGGAUGACAUAUUAUCAAAUUUCUCGCAAAUGAUCGAGCAACCUAAGAGACAAAGUCAAUCGAAUUGAAAUGGUCCGCGUAUAGUGGAAGUGGGAUUGCACUAUACUCGUAUUAGGUAGAUGCACGGACGGACGUAAUACAAACGCUAGUUGACAGUUCCAAUUAAUCGUUCAUGCGACCCAAUUGAUUUAGUUCUAAACUUUCGCUCCAUACUACAACCUUCUCAUUUUUCUAUUAUCACGUUUUCUUAACCGCUAAACGGUGGAUUUUAUAUAAAAGAAAAAGAAAUACUCCAUCAUUUUACGUUAUAAGAUAUUUUUGACUUUGGUCAAAGUCAAAUUGUUUCAAUUUUAACCAAGUUUAUAGAAAAAAAUAGUAAUAUUUUCGACCCAAAAUAAAUUUAUUAUAAAAAUACAUUUAAUUAUUAAUUUAAUAAAAUUAAUUUGGUAAUAUAAAUAUUAUUAUAAUUGUUUAUAAACUUAGCUAAAUUUAAAAUAGUUUGACUUUGACCAAAGUCAAAACAUCUUAUAACCUGAAAUAGAGGGAGUAUAUUUAUAGAUUUUUUUAAAAAAAUAAAUCUAUUUUCUAAAUAUAUAAUAAUUCAUACUUACUUAAUCAAGCAUGCGUAUAUAUUUAGAAAUGGUCUGAUGGAUUGAGUGAGUCGUACUUAAGGACUAGAGCUAUGAGCAGUGUGAACGGAUAGACGUGCCAUCACAAAUAAUAUAAUGUAUUUAUUUUUUUAUGAAGAAAAAGAAGGAGCAAAAAUGAAAAAUAAGAAAAAAAGACAAUAAUAAUUAGUAGGAGUACCUACCAACCGUGGACUAGUAUUACCUGCUGACCAACCGACCUUGCAAAGGAGGCUUAUAUAUAUACUCCAGUAAAAGCUGCCUGUUUCAUCGAUCAUCGAUCACAGACAAAUUAAAGCAUACAGCAAUUGAUUCAGAGUAGUUAGCUUAACUAGCUCCUCUGCUUUAAUUAGUUUGCCCCUUCCAGGUAGAGUAUAUAUGGGUAGUAUAGGAGGAGUAGCGGUGGUGCUGGUGGGCAUGGCGGCGAUGCUGGUGGGCAUGGCGUCGGCGGCGACCUACAACGUGGGCGAGCCGGGCGGCGCAUGGGAUCUCACCACCAACUACACAAACUGGGUCGCCCAAAAGAGGUUCCAUCCAGGCGACCAGAUAGUGUUCAAGUACUCUGCUCAGCGGCACGACGUGGUGGAGGUGAACAAGGCGGGUUACGACUCGUGCUCCACCUCCACCUCCAUCGCCACCCACACCACCGGCAACGACGUCAUCCCCCUCACCUCCACCGGCACCCGCUACUUCAUCUGUGGCUUCCCCGGUCACUGCACCACCACCGGCACCGGCAACAUGAAGAUCCAGAUCGACGUCGUGCAGGCAGAUUCCUCCUCCGCCCCGGCGCCUGUGGCCACCACUACUCCCCCUUCGCCGCCCUCCUCCGCCGCCACCUCCCUCAAGGCCACCGCCGCAGCUGCCGUCCUACUCGCCGCCCUCCUCAUCAUGGCUUAAUUAAUUAAUACUCCUAGCUGCUAGCUUAUUUGUUUUCUUUUCCGAUCCUGAGAGAGCCAUGUAUACUACCAGUCCCAGCUAGCUUUUUGCUUGUAUCCUCAUCCAUCCGGAUUGAUUGUACUUAUAUGAUUAGUAUUUUAGUCUUUAGAGGAGGCAUUUGAUUAUAUAUAUGUCUAGUACUAUGUUGAUUAUCUCUCAUGCAUUAUUAUUAUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.79%
ME_num:
MEP:
50.81%
HE_num:
HEP:
37.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.86
Avg Expression:
65.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.90590655794445 | 3.43650862256951e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.97313172569182 | 8.99011614797147e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.46765990068169 | 4.26160250395063e-18 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.31340851563205 | 3.74639563153462e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.72522303698192 | 3.20763227453224e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.78823834146761 | 1.20791783351411e-18 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.05139869792546 | 9.37276327544283e-05 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.99618070387005 | 3.05841197227386e-09 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | 1.12488982031375 | 3.15332424764456e-13 |
| 10 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.16715091284365 | 0.00144430459925932 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.28444839909843 | 2.21505491128668e-14 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.11430057089463 | 5.38078287593829e-17 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.05783885339818 | 8.69036055519909e-06 |
| 14 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.1142202728684 | 6.04216873986788e-17 |
| 15 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.11410422473964 | 5.59696200935849e-17 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.0095511033743 | 2.16922184442551e-08 |
| 17 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.46028637386946 | 5.8298707274533e-11 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.31031971336632 | 6.45404884703588e-14 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.03525735387301 | 0.000370121097882479 |