Chr:
Chr9
Start:
20629684
End:
20633587
Strand:
+
Ref_name:
LOC4347641
Sequence
(XM_015755546.2):
GCAACGCGGUGCCCGCGCGCCGCUUGCUCCCCCCUCCUCGCGCUCCACGCGCGCCCGCGCUCGCCGCCAGCGCGCGCUGCCCCGGAGCGCGACGACAGCUGUGUGGGGGGCAGCGACAGCGCCACUGGCGUCAGCACCAGUAACCGAAGCCGCGCUCGCUGGCUACAAAACACGCGCCCCCUCCUCCCCUCACCGCGGCUGCGCACGCAUUCCCCAUUCCCCAUUCCCCUAUCUCUCGAACCCUAGCCCCUAGUCCCCUCCCGAACCCUAGCCCCCACCGCGCCGCCGCCGCCGCCCUCCCGAUCGCGAUGGCCGCCGAGAGCUACUGGCAGUACCAGUACGCCGCCGUCGACCCGCGCCAGCAGGCGCCGGCGCCGGUGCCUGUGCCCACGCCCGCGCUCAUGUGGCAGCAGCAGCAGCAGCAGGCGGGGUAUCAGCCCGCCGUGGCGCCGGUCGCGCCCCCGAUGGCUGCUCCGCCACUGCCCGCCGGCCCCCCGCCGUCGUUCAAGCGCCAGCGCCCGGAGUACUUCGACAUGCCUUCUGGACAGGGAAACAGCCUCUUCCACGAAGCAAUGAGCCCCCAUUAUGUCCAUCGCUUGAACAAUCAGAUGUCCUAUGCUGCUGGUGCUAACCAAAGUGCUAUUCCACUUGGUGGGAUGGCCACAUAUUCAGCAGGCAUGGACAGUGGAAACCAUGGCGCUACAAUAACUGAAUCAAGAACUCUCUAUGUGGAAGGACUACCUUCGAACUGCACAAAGAGAGAGGUUGCACAUAUCUUUCGCCCCUUUUCUGGUUUCCGUGAGGUGAGAUUGGUCAACAAGGAGAUUAGGCAUGCUGGAAGCUGUAACCUCUUGUGUUUUGUUGAUUUUUCAUCUCCUCCUGAAGCUCGUGCUGCUCUGGAGACUCUGCAAGGCUAUAAGUUUGAUGAACAUGACCAUGAGUCUUCCAACCUGCGCAUACAAUUCUCUCUCACUCCUCGCAGGAGGCCAAUUGGUGGGCCUCGUGUUAGAAACUAAGUUUCUUGGGUGGAGUUGAAUUAAUAAUGCAGAGCAAAAUUUGUGGAGAAUCUCUAGGGAGACUUGUAUACAAUGCUAGACCAAACUUGACUCUGAUGCACCGUUAGUGUUGUAUGUUGUUGCUUUGCAAAGAUUCUGCCGUGUAGGUUGGUAUGGAUGUGUUGAUAACUAUUGGUUGGAUGGAAACAAAGUAGAUGGGGCUGAAAAAUUGUUUAAUCAUGUGCUGUGUGAUCUGAAUUACAUCUAUUCUUCUGUGGAUGAUUGCAAUGAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.24%
ME_num:
MEP:
77.24%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.85
Avg Expression:
23.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.26314912195197 | 0.00451811004965163 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.29542924460068 | 0.00063541355494482 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.16267438394131 | 0.00069612343072062 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.37870936276277 | 0.00210215857563134 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.06444866916277 | 1.18690221376556e-08 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.70701280506379 | 0.0112745170077848 |
| 7 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.20653450003034 | 0.00854415835764389 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.85564188690546 | 2.26655171213509e-09 |