Chr:
Chr9
Start:
11555476
End:
11556548
Strand:
-
Ref_name:
LOC4346840
Sequence
(XM_015757016.2):
CUUUGCUUGCCACCUCAUCCCGGGUGACCAACUCUCAUUCUUUAUUAGUCCUCUCCAGUGAAGUCCCCCAUUCCAUUCAUCCCGGAGUGACGAACUUGAUGCCGGCGAAUCCGACGCCGACAAGCCCAACGACGGCCUCCGCUCCGGCGAGCACGUCUCGGUGAUCUGCGAACGGGCUGCUACAAAAUUGUGGCUGGCGCGUCGUCUGUAGAAGAAAUUCGAGUGCGCAACGCAUCGACGCCCACCCCGAAUCGUUGAGGUCGAGAUCGUGUCGGCUGCUCGGCGGCCAUGGAUUCCGCGACGGGGGCUAUGGGCAACCUGCUGCUGAAGCUAGGCGAGCUUGCCAUGGACGAGUACAAGCUGCAGAAGGGCGUCAAGAGGAACGUCGAGGCUCUCCGGAGAGAGCUGGAGAGCAUGCAGGCCGCCCUCCGCAAGGUCGGCGACGUGCCCUCCGACCAGCUCGACGAGCAGGUCGAGCUCUGGGCGCGCGACGUCAGGGAGCUCUCCUACGACGCCGACGACGUCCUCGACACCUUCAUGGUGCGGGUGCGCGUCGACGACGACAACCAUGGCUCCAAAGGGAUGGUGAGCAAGGUGGCCGCCGGCUUCUUGGGGAAGGCGGCCAAGAUGCGCCACGACAUCGCCGACGAGAUCAAGGGCAUCAUGGAACGCGCCCGGGAGGUCACCGCUCGCCGCGACAGGUACAAGGUCGACGCCGUUUGACGGAGCGCGGGGCUCCUCACCGGGAGACCGCGCAGGUCCCCCUUUGCCAGUUCGGCCGGGGGCCCUGGCUGAGGUUCUAAGCUCCUAGUCUGUGAAACGUUCGCCAAAGUGGAAACACACAAGACACGGGCGAUGUAUACAGGUUCGGGCCGCUGAGAAGCGUAAUACCCUACUCCUGUGUUCUGGUAGAUCUGUGUAUGAAGAAGCUACCAAGAGCUGGAGAGCCAGAGCGCUCAAACUCUAGAAACCCCUUUCCUCCUUUUUUCCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.91%
ME_num:
MEP:
49.59%
HE_num:
HEP:
18.29%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.88
Avg Expression:
35.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.45124835102059 | 5.62484399333304e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.91560416565078 | 4.33754225454904e-10 |
| 3 | Azucena // root // control--/--Azucena // root // Al | -1.62547563462798 | 9.41188132922287e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.94366296515695 | 0.0283542261055713 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.97723439381015 | 0.000735071176866471 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.4689458961917 | 0.00201850220121293 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.3323233095941 | 0.0120792014668059 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.51031380075769 | 0.00307506662860488 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.53689389162757 | 0.0033298403331282 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.49769817642478 | 0.0491369951304175 |
| 11 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.22717708234857 | 0.0494596114575327 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.87436617746426 | 2.69398278621448e-10 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.5788534111775 | 0.00401739353966287 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.41563941674654 | 5.29148275694982e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.39013836251749 | 0.0037474091084187 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.11646586971034 | 0.0278018190377295 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.37208837107803 | 8.43887271277051e-38 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.87254545886673 | 9.45274233753466e-05 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.22625168811763 | 0.00135081915617988 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.59076442341553 | 0.00258604622126013 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.88573418734519 | 1.41418488349018e-05 |