Chr:
Chr9
Start:
4227433
End:
4229770
Strand:
+
Ref_name:
LOC4346531
Sequence
(XM_015795962.2):
GUAUUUAAUGCUAUUGACACUCGUUGAUAUGUAGGGUUAGUGAUGGCCUUACAACUGUGUACAACUGAGUUCAUUUCGCCGUCAAUUCGCAUCAAUUUUUUAAUCUUCGGAUGGAGAGAUCACGAGACACCAACAACAUCGACAAGGACUACUUUUCUCCACAAAGCCAUCAGUGUCAGUUUCGUCCUCUUGCUGUUUGUCCAUAUAAUAUGACAGUAGAUUUUUUUUUUUCAAAAUCUGACCAUAUCUUUACUCCCAAUGUUCUAUAAUAUAAUCAAAUUCAGCAUAAUUUCUCCUUCAUUAUUGGCCUUUUUAAUUAAUUCAAGAUAGCCGUCUGAUUUUGUCGAUUUGGUGAGCUAGAACGUGACUUGUCAUACUUGCCACAUUACGCUGAUCUUUCAGAUUCCCUUUUCGUCAGAUAAUUGUAUGAUCCAAACUAAUGAAGACAAGCUUAAUUGAGAGAAAUUCCCCCAAUUCGUGGACAAACAGAGUCACAAUGGCAGAGGAAACGAAAAUUAACGCGAUCAACCAUCACCACCUGAUCGACAUCUCACCGGAGUUGGGUGGCGCGACCGCCAUCGAUGGCCCAAAGGAGAUGAAGGAGUUGGGCAUCGUCGAUGGCGCAGUGGAGAUGAAGGAAUUGGGCGUCGCUGCCGCCGUCCAUGGCGCAGGGGAGAUGAAGGAGUUGGGCGGCACGGCCUCCAUCGAUGGCGCCGCGGACAAGAAGGAGCUGGGCGGCGCGGUCGCCGGCGCCGGCGGCGCAGCGGAGACAAAGUGGCUGCGCAAGCUGACGUCGUCGAGCGUCAACACCGCCGUGCUGAGAGACCUCAUCGCGCGGACGCCCAUGCUGUGGUACCUCGGCGAGCGCUCCGGCACCAUCCUCCGGCCGCGCUCCCGGCGCGCCGGCGUCGACGCUCUGCACGCGGUGCGCGCCGUGGCCAUCGGCCCGUUCCACCGUCGUGACCACUGGCUCCCCUUCCCCGACGACGCCAAGCUGCCGUUCCUGCGCUACCUGCAGGACCAGUGCGGCCUCGACGUCGAACACUACGUCGCGGCGCUCGCCGACGAGAGCGACCGCCUCCGCGAUGAGUUCGCCGACGACGACGUCGGGGACGAUGUCGCCGCGGAGAUACUUGGGGACGAGGAGAAGUUCCUGCAGAUGGUUCUUCUUGACAGCUGCUUCAUCCUCGUGGUCAGCAUGAUGCUCAGCAAGGUCUGCACCGACGGCGACAAGGCCAGCUGCGUGUCGCGGGCGGCGUCCAUCAGCCGGGAGUACUUCAUACUUCACAUGGCCGUGUCGCAGCACGCCGAGGACAUCAAGCUGGACAUGCUGGUGCUCGAGAACCAGGUACCCUUCGCCGCCGUCAAGCUGCUUGCCGCCUCGUGCAGCAAGCUCAAGCUCCUGCGCCCCGUCGAAGAGCUCGUGCUCGGCUGCUUCGACGACAUCUUGCCGAAGCGAGCGAGCCCCGCCGCCGGCGACACCGAGCCGUUCCAGCACGUGCUACACCUCUUUCACUGGUCGCGCGUGCCGACGAGCAAGUACUGCAUCCUGUCGACGCCACGGAAGCUUCUCAAGAUCAAGAAGGAGUCGGAGCGGCUGUUCCCGAGCUCCAUGGAGCUCUGCCGGUCGGCGGUGUGGUUCCGGAGCGCGGCGGCGAGCUGCGGCGACCUCGACAUGUGGUUCUGGGGCCGGACGGCGAGCCCCGUGGCGGUGAUGACCAUCCCCUGCCUCGACGUGCACGAGUACAGCGCCACCGUGCUGCACAACAUGAUCGCCUUCGAGAAGCACUUCCACUGGGCGCACGGCGCGUGCGUGACGGCUCACGUGGCGAGGAUGGAGGGCCUCGUCCGGUGCCCGCAGGACGCGGCGUUCCUCCGGCGGCGAGGCGUGCUGUCGAGCAUGCGCAAGACGGACGCGGAGCUGGUGGCCUUCUUCCGCGAGCUCGGGGAGGAGACCGUCGGCGCGCGCCUCCCCGACGAGUACGCGGAGAUGGUGGAUGCCGUGGCGUGCCACCGGAGCAGGAAGGUGAGCUGGUGGUGUGGCGGCUUUGUGCUUCACUUUUUCCCGUCGCCAUGGGUGGUCGUGUCGCUCGUGGCGGCUGCGGCGGUCAUCGUUGUGCCAUCGCUGCUGCAGACAGUCUAUACUAUUCUUAGCUACGUGAAAACUACCUAGGUUAUGCCGAAAUAAGUGUACAAUUUCCAACCUCUAUCCCAAAAAUUAUACGGGAUUUUGCCCAUGUAAGGGCACCCGCAAUGGUAAAGUAAGGUGCUCUCUAUAAAAUAUGUACAUCUCAGCAAUAGAUUAGAUUAAUAGUAAACCAUCUCAAUAGUAUGUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.2%
ME_num:
MEP:
71.95%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.68
Avg Expression:
6.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.9681727593267 | 0.000267698364198538 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.73322215204288 | 0.000865739816567419 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 2.04438309250936 | 0.0112368909091573 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.6234579660629 | 0.0181491538421312 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.38663662523648 | 1.34450426151337e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.87670016723124 | 1.70181961491194e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.76357715290281 | 9.75105787250655e-13 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.9544160475381 | 1.81999008777606e-14 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.07506298906433 | 0.0262079143615398 |
| 10 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.33611796406426 | 0.00423806129089474 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.7364692260831 | 0.0393007939297345 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.77180348698972 | 0.0166524484315682 |
| 13 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.01095509124944 | 3.52478120655313e-07 |
| 14 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.03779312918883 | 0.0156875116208777 |
| 15 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.40222089926094 | 8.37246258338507e-07 |
| 16 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.22517818873507 | 7.03306605811728e-08 |
| 17 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.69344920701149 | 0.00253457853630157 |
| 18 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.66979168217462 | 3.93158750396232e-06 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.23886306793309 | 0.000368869224180284 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.50728937944534 | 0.0220769960359671 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.6780147301681 | 0.000123272797827367 |
| 22 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.61757110571798 | 0.00114354055599963 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.43963328901455 | 8.42184754693782e-12 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.1239560645249 | 1.86738154466318e-10 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.69402642722912 | 0.00346179791588731 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.40876412198587 | 8.44715217909298e-05 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.34842232143989 | 0.00303977415436369 |
| 28 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.55527939481113 | 0.00149474533506015 |
| 29 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.73014757109264 | 0.0011416897437697 |
| 30 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.09955193040616 | 1.93983026166665e-05 |
| 31 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.42671439245567 | 0.0148114155003569 |
| 32 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.09963194563927 | 2.00997024737626e-05 |
| 33 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.09969685258766 | 1.94917346460378e-05 |
| 34 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.82374074412303 | 0.000213106262624646 |
| 35 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.89313592987719 | 0.000464412805025161 |
| 36 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.6006673063946 | 0.0022507088646301 |
| 37 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.03772819381705 | 2.88954390905696e-09 |