Chr:
Chr8
Start:
25120604
End:
25134368
Strand:
+
Ref_name:
LOC4345986
Sequence
(XR_001548360.2):
AGCUCGUCCAGGCGUGUGCUGGCGAUCUUAUCCACACCGUUUGCUUACACCCUAAGCUAAGCCCCAAUGAAAUCCCCACCUCUCUCUGCCUUUCCUCUCGAAUGCAUUUCAUCGAGCACCUUGUGUGCGUGCCUCCAUAGCCAUUGCUUGAAGCCGGAGCCGGUGCUGACGACCGCGGGAGCUGUGGCUUCGGGAUGCCUCUGCUGCUGCUGCUACCUUGGAUCAACUCCGGGUGCCGUUGUGACCUGAGGACCUGCGGUCGUACACCUGCGCGCUCGCCGCCGUCGUCCACCUCUGCUUCACUGCCGUCUCCCCACCACGGCAUCGAACAUCGCCGUUUCGCUGCCUCUCGAGUAUUGAAGAGAAGCCCUUGUUAGUACGCUUGCGUACCUAACAAGAUAAUCGGAGUGCGGUUCCGUUCUAGGUCUCGUUCCCCAGUCGACUGCUUGUGGCAUGUCAACCGAGCCCUUGUAUUAUUUUGUCUUCCGCUAUUGUUUCUCUGAUAGUUGUUGGCCUGCUUGGCCCUAAUAUAAACAUUUAACUCUCUUAGCCUGAAUUCAUUCGUGAUAUGUUGUGAUUCGGUUAUA
Sequence
(XR_003243834.1):
CUUUUCUCUCUUUUCCCAGCCGCCACUGUUCCUGGGCCGCGAGGUGCUCGACCAGAGCCCUAGCCCAAGCCGCACACACAGCGCCACACCUCCGAGCUGCGACCGUGUCGUGCACGACCAGUGCGCCCUUCCGGUUACCUUGCACCGUGCGCCGCGCUGUGUGUCGCGCCACGCCCGCGUGGGCCCGCCGCCCGACCAAGCCGCCGAAAUCCUGCACAAAGGCCGCGUCGCCACGAGCGCCUGCGUCAUCCCGUCUCAUCGCGAGUCACCAUCGAGCUGAGGGAUAACGGCCGCCACGUUGUUCCGUGUCACCCUAGAAAAUAGCCGCACCUCCCUAUCGGCGGCCGUUACCACUGCCUGUCGCUGCCAUUCUUGUCGCCAUCGCAUCGCCAUCGCGUCACCAUCUCGUCGCCCCGAGCCGAGACCGCUGGAUAAUGCAGCGCUUCUUACCACAGCUAGCAAUCCCUCCCCUGCAACUCUACUGUAUGGAAAAUCAUGCCCGAUCGAUGCAUCGAACCCGAAUCUUGGGAGGAUCAAAACUUAUCCGCGUCAUCCAUCUCCUUGCCCUUAUCCGAUCGCUAUUAGAGCUCUAGCUCGUCCAGGCGUGUGCUGGCGAUCUUAUCCACACCGUUUGCUUACACCCUAAGCUAAGCCCCAAUGAAAUCCCCACCUCUCUCUGCCUUUCCUCUCGAAUGCAUUUCAUCGAGCACCUUGUGUGCGUGCCUCCAUAGCCAUUGCUUGAAGCCGGAGCCGGUGCUGACGACCGCGGGAGCUGUGGCUUCGGGAUGCCUCUGCUGCUGCUGCUACCUUGGAUCAACUCCGGGUGCCGUUGUGACCUGAGGACCUGCGGUCGUACACCUGCGCGCUCGCCGCCGUCGUCCACCUCUGCUUCACUGCCGUCUCCCCACCACGGCAUCGAACAUCGCCGUUUCGCUGCCUCUCGCAGAGUAUUGAAGAGAAGCCCUUGUUAGUACGCUUGCGUACCUAACAAGAUAAUCGGAGUGCGGUUCCGUUCUAGGUCUCGUUCCCCAGUCGACUGCUUGUGGCAUGUCAACCGAGCCCUUGUAUUAUUUUGUCUUCCGCUAUUGUUUCUCUGAUAGUUGUUGGCCUGCUUGGCCCUAAUAUAAACAUUUAACUCUCUUAGCCUGAAUUCAUUCGUGAUAUGUUGUGAUUCGGUUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.38%
ME_num:
MEP:
52.44%
HE_num:
HEP:
35.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.72
Avg Expression:
29.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.67467861333299 | 0.0365892260084588 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.20598256242621 | 0.0338291261904743 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.36219630705104 | 1.15773471691459e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.31909256841681 | 1.21063507765657e-13 |
| 5 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.45842327299623 | 7.87679373876115e-10 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.51780550331155 | 1.93180924475633e-14 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -2.6898686775058 | 0.0275866293060925 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.56909915143685 | 4.44931502398134e-08 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.474860154839 | 0.0218875019108954 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.14926546995706 | 0.000394434000018928 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.35001295672253 | 0.012268687165278 |
| 12 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.55570257346482 | 0.000115058490951154 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.13565827183813 | 1.42162412582505e-06 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.04125405685175 | 0.000446453298839692 |
| 15 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.1740191851382 | 8.20730738562868e-10 |
| 16 | 9311 // leaf // control--/--9311 // leaf // salt | 1.00144676848122 | 3.89207312764761e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.94720631032387 | 4.04536897370665e-24 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.52261029573969 | 0.000355341948329588 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.20661206511165 | 4.68303265539476e-08 |
| 20 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.03487979941104 | 0.000270511078341745 |
| 21 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.034802580508 | 0.000276149081814629 |
| 22 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.03472791780925 | 0.000272127424237009 |
| 23 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.94469600166622 | 1.14057922319254e-09 |
| 24 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.0334512530714 | 0.00506910744077531 |
| 25 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.2795381479927 | 6.17824426163264e-16 |
| 26 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.34625330222012 | 5.30915003103832e-12 |
| 27 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.88896888909447 | 1.13859567898884e-17 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.20527049978991 | 1.46318491465177e-05 |