Chr:
Chr8
Start:
7325157
End:
7327816
Strand:
-
Ref_name:
LOC4344960
Sequence
(XM_015794084.2):
UGCAUAUGCAGCAUGAAGAGUUGGAGUGGUUGUAUAAAUAGGUAGGCAGUGGUGGACUGCGAGGCGCUGCAAGACAGACAGAUACAUCGAUCGAUCGAUCAGAGCUUUUUCUAUCAUCAUUAGCUAGCAAGAUGAAGCAGUACUACAAAGCAGCGCUGCUUCGCUACUGGGUAGUAGUCCCGUUCCUCCUGUGGCUGGUAGCCACGGAGGAGCAACUCGCCGCCGGCGCCGUGGCCGGGGCAGCUGCCGAGUCGUCGUCGACUUGGGGCGGCCAGGGCCAGCUGCAGCUGCCUCUCUGGGUGCGACCCGGAGACCGGCGCCUCCUGGGGAUGUCUGUGGCCGGCAUGGCGGUGGAUGCCGUCGUGGCGGCCGACGGCACCGGCCAGUACACUACCAUCAAGCAAGCCGUGAAGGCAGCAGAGGCGGACACGAGCGGGCGCCGGUACACAAUCCAUGUGAAAGCUGGCAAGUACGUCGAAGACGUUGAGAUAUGGAGGCCUAAUAUUACCAUGAUAGGCGACGGGAUCGGGCGUACCAUAAUCAGCGGCAUGAAGAGCAAAAACAAGAAUCGGGGGACGGCCUGUACGGGCACACUGAACGUGCAAAAGGACGGGUUCAUCGCGCGAGAGCUUACGGUGGAGAACACCGCGGGGCCGCAGGCAAUGCAGGCGGCGGCGGUGGUGGUGAAGUCGGAUCGCGCCGUCUUCUUCAGGUGCGAGAUAACGGGUUACCAGGACACGCUGCUGGCAGAUGUUUACAGGCAGUUCUACAGGGAAUGUGUUAUCUCCGGGACAAUUGAUUUCGUGUGGGGCGAGGCGACGGCCGUCUUCCAGAUGUGCCACCUCCUGGUGCGUCGCCCGUUGGAGGGCUCCCACAACACCAUCACCGCGCAAGGGCGCAACCACUCCGAGCCCGUCGUCGCACGCUCGGGUUUCGUAUUUCAGGAGUGCAACGUGUCGACCAAGGAGGACCUGAGGGGCGUGGACACCUACCUGGGCCGCCCCUGGCACCCGGACUCCCGCGUCAUCUUCAUGUCGUCCUACUUGGACGGCAACGUGGUCAAUCCCAAGGGAUGGGUGGCGUGGCGCAUCAACAACGCCACCGACGAGCGCUCCACCGCCAGCACCGUCUACUACGCGGAGUACAACAACACUGGGGCUGGGGCCAACGUCACCCAGCGUGUUAACUGGCAUGGUUUCCACCUUCUUGCACCACACGAGGUACGCAAUUUCACCGUUGACAGCUUCAUCGACGGUGGCAGUUGGCUGCCAGAGACCAACGUCCCGUACCAUCUCGAUCUCGAUCUCGGUCUGUAAUAAUACCUGCUACUCUCUUUAUUUACUGUUUGCCUGCCUAUAUUUGCUUGGUAUUGGUAUUGUAUCAUCGAUCUCGAUGUGCUAGCUCCUGUGUGUGUAGUAUGCCAUGGUUUGUACGUAACUGGUACUGUAUGAUGCAUGCGUGCUCCUGUGUGUGUGUGUAUAUGCGAUAUGAUGGUUUGUAACUGGUACUGUAUGAUCUCGAUGUGCUCCGAUGUGGCUGUGUGUAUUGCGAUGGUUAAUGGUUUGUAACUUAAUUUUCUUUCUUUAUGCACUGUCUGAACGAGGAAUAAGCACUGUAUAUAUGUUUGUAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.86%
ME_num:
MEP:
7.32%
HE_num:
HEP:
13.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.95
Avg Expression:
260.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 8_days_after_shift | 1.10101828981813 | 3.64592550122465e-07 |
| 2 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | 1.58363503460182 | 2.90949897505895e-32 |
| 3 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 2.09484191001455 | 0.000929283079505495 |
| 4 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 8_days_after_shift | 2.34112906111131 | 0.000949580182342002 |
| 5 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 2.31961192334102 | 2.29499082608296e-06 |
| 6 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.74950793777459 | 0.00172722023954167 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 7.31082521036848 | 4.52924739890852e-09 |