Chr:
Chr8
Start:
1628465
End:
1631125
Strand:
+
Ref_name:
LOC4344580
Sequence
(XM_015793622.1):
UCUCACCAUUCUCACUGCUCUCCGAUCCCCUUUUCUGUCCUCGUUGCCUCCGCCACUCCUCCCCCUCUCUUUUGCUACCUCCUUGCCUCCGCCGACCCUCCCCCUCUCCUCCACCUCCCUUCCCCUGUCUUCCGUCGCCCCUUCUCCUCUCCUCCUCUCUGCUCGGGGACGGCCAGAUCCGCCGCCGCGUGCUUAGGGACAGCCAGAUCCGCCGCCGCACGCUCGGGGGUAUCCGGAUCCGCCACCACAAGCACGGGGCAGCCCAUUUAACGACUACUGUGGCUCCCUCAACUCCCUCAACCACCGUGUGCUUGGGGGCGGCCGAAUCUACCACCGUGCACACGAGGACGGCCUACUCACAACAGCGGCUUCCUCAACUCCCUCAAUCGCCACAGGCACAGGGGUGGCUGCUCAACGACGACGGGUCAUCGAUCAUCAUUGGACACCAAUUAAGCAACAGCAAUGGCGUCGAGGAGCAUAUCAAGCUGCACAACUGAGACGGCAAAAGGCAUCCACAGGUUCGAGAUCUUCAGUUACAGCAUGAUGAACACCGAAGCCGAAGACGACUCCAUCCGGUCCGGCGUCUUCAACGUAGGAGGAUUCGAUUGGGCGUUGCUUUACUACCCUGACGGCAUCGACGACGACAGCAAGGGCUACAUCGGCGUCUACCUCGAGCUGAUCAGCAAGAACGGCGAGCCAUGGGCACUCGUCGACGUGAAUCUGAUCAACCAGCUGCAACCCGGGCAACCUCGUCAGCUGUUCACCAAGACCGAUGUGCCUACCCCGUUCAGAUCUUCAAGCUUUCAGGAGUCUACCUUGGGGUCUCUCAAGUGCAUGAAGAGGAGCGAUAUUGAGAGCACUCCAGGGUUCAUCGUCAAUGACUGCAUCGUGAUCGAAUGCAAUGUUACUGUCAUCUAUGAGCCAAAAGUGUCUAAAACCAGGGCAUUGUGUGACGCUGAAACUAGUUCGGCAUUGCGCGAGAUCGAGGUGCCUCCUAUGGAGAUAUCGUCGGAUUUCGCCAAGAUGUUGAAGGACGGUGUAGGAGCAGAUGUGACAUUCAGAGUUGGAGAAGACACAUUCCGUGCCCACAGGGCGGUGCUAGCUGCGAGGUCUCCAGUAUUUCAUGCUCAGCUCUGUGGACCGAUGAAGGAGAAGAAGGAGACACAAAUGCAGGAGAUAACCAUCCAAGACAUGCAGCCAUCUGUCUUCGAGGCUUUCCUCUAUUUCAUCUACACCGAUUGUGUUCCAAGAAUGGAUGAUCUUGGCAAUGGUGAGAAGAUGCAUUUGAUGAUGCAUUUGCUUAAGGCCGGUGACCGGUAUGGAUUGGAGAGGCUCAGGAUCAUGUGCGAGAGAUUUCUAGCUACGAACCUCGACACGGAGCAUGUAUCUGCGAUACUGGGUCUAGCUGACUUGCUAGAUCUCAAGAAGCUCAAGGAAGCUUGCAUGGAGUUCAUGGUCCCAUCUGAGAGAAUGGAUGCCGUGGCUGCAAGUCAAGGGUACCAGCAGCUGAAGAGAGCAUUUCCCUCUCUGGCGUUUGAAGUGUGGGAGAGGAGGAGCCGUGUUCGCAGGAAUUAAUUAACAUCUUCUUGAUUCAGAAGAUAUAUGUGCGCGAUGUCUGGAGAUUUCCUUUUUGGUUAUGUUUGUUUUGGUACAUUUGAUGAUCUGACGAAUGUUCUCUCAACAAUGUGAUGACUGAUACGGUGCACGCGUGGUUGCACCUUAAUGUAAUGUGGCUAUCUGGAUCAUGCAAAUGGUUUUACCUUUAGAUCGAGUUGUUUUUUAAACCUUA
Sequence
(XM_015793623.2):
UCUCACCAUUCUCACUGCUCUCCGAUCCCCUUUUCUGUCCUCGUUGCCUCCGCCACUCCUCCCCCUCUCUUUUGCUACCUCCUUGCCUCCGCCGACCCUCCCCCUCUCCUCCACCUCCCUUCCCCUGUCUUCCGUCGCCCCUUCUCCUCUCCUCCUCUCUGCUCGGGGACGGCCAGAUCCGCCGCCGCGUGCUUAGGGACAGCCAGAUCCGCCGCCGCACGCUCGGGGGUAUCCGGAUCCGCCACCACAAGCACGGGGCAGCCCAUUUAACGACUACUGUGGCUCCCUCAACUCCCUCAACCACCGUGUGCUUGGGGGCGGCCGAAUCUACCACCGUGCACACGAGGACGGCCUACUCACAACAGCGGCUUCCUCAACUCCCUCAAUCGCCACAGGCACAGGGGUGGCUGCUCAACGACGACGGGAUGAUGGAGAGUUGCUUGAUGCAUCGGCUCGAAUCGAGCAACCUUUGUUUUGGAUUCGGGACUCUCAAAGAUGGUCAUCGAUCAUCAUUGGACACCAAUUAAGCAACAGCAAUGGCGUCGAGGAGCAUAUCAAGCUGCACAACUGAGACGGCAAAAGGCAUCCACAGGUUCGAGAUCUUCAGUUACAGCAUGAUGAACACCGAAGCCGAAGACGACUCCAUCCGGUCCGGCGUCUUCAACGUAGGAGGAUUCGAUUGGGCGUUGCUUUACUACCCUGACGGCAUCGACGACGACAGCAAGGGCUACAUCGGCGUCUACCUCGAGCUGAUCAGCAAGAACGGCGAGCCAUGGGCACUCGUCGACGUGAAUCUGAUCAACCAGCUGCAACCCGGGCAACCUCGUCAGCUGUUCACCAAGACCGAUGUGCCUACCCCGUUCAGAUCUUCAAGCUUUCAGGAGUCUACCUUGGGGUCUCUCAAGUGCAUGAAGAGGAGCGAUAUUGAGAGCACUCCAGGGUUCAUCGUCAAUGACUGCAUCGUGAUCGAAUGCAAUGUUACUGUCAUCUAUGAGCCAAAAGUGUCUAAAACCAGGGCAUUGUGUGACGCUGAAACUAGUUCGGCAUUGCGCGAGAUCGAGGUGCCUCCUAUGGAGAUAUCGUCGGAUUUCGCCAAGAUGUUGAAGGACGGUGUAGGAGCAGAUGUGACAUUCAGAGUUGGAGAAGACACAUUCCGUGCCCACAGGGCGGUGCUAGCUGCGAGGUCUCCAGUAUUUCAUGCUCAGCUCUGUGGACCGAUGAAGGAGAAGAAGGAGACACAAAUGCAGGAGAUAACCAUCCAAGACAUGCAGCCAUCUGUCUUCGAGGCUUUCCUCUAUUUCAUCUACACCGAUUGUGUUCCAAGAAUGGAUGAUCUUGGCAAUGGUGAGAAGAUGCAUUUGAUGAUGCAUUUGCUUAAGGCCGGUGACCGGUAUGGAUUGGAGAGGCUCAGGAUCAUGUGCGAGAGAUUUCUAGCUACGAACCUCGACACGGAGCAUGUAUCUGCGAUACUGGGUCUAGCUGACUUGCUAGAUCUCAAGAAGCUCAAGGAAGCUUGCAUGGAGUUCAUGGUCCCAUCUGAGAGAAUGGAUGCCGUGGCUGCAAGUCAAGGGUACCAGCAGCUGAAGAGAGCAUUUCCCUCUCUGGCGUUUGAAGUGUGGGAGAGGAGGAGCCGUGUUCGCAGGAAUUAAUUAACAUCUUCUUGAUUCAGAAGAUAUAUGUGCGCGAUGUCUGGAGAUUUCCUUUUUGGUUAUGUUUGUUUUGGUACAUUUGAUGAUCUGACGAAUGUUCUCUCAACAAUGUGAUGACUGAUACGGUGCACGCGUGGUUGCACCUUAAUGUAAUGUGGCUAUCUGGAUCAUGCAAAUGGUUUUACCUUUAGAUCGAGUUGUUUUUUAAACCUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.68%
ME_num:
MEP:
6.3%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.98
Avg Expression:
8.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.26120569803239 | 6.22383098375146e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.25722480212705 | 1.36652313043358e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.50688523135475 | 2.67433367537871e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.67363632728981 | 1.44040227229248e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.58577045632712 | 0.0137437475453765 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -7.0742339725593 | 1.0933126721426e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.51959770266296 | 2.25650385558059e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.00089603768449 | 0.00514166868808985 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.83884003320408 | 3.95287708341713e-08 |