Chr:
Chr8
Start:
341262
End:
347711
Strand:
+
Ref_name:
LOC4344454
Sequence
(XM_015793666.2):
ACUAUGGUAGGUGAGUAUGGUCGGGAGGGACACAUAUACAUCAUGGCCGGAUUGGUUUGAGCAAGUUUUUUGUAACAAUAUAGCCAACUGCAUAGAGCCAGCUCAUGCAUAUUGGUUGGGAUGGACUUGGGGGCUGAGAUAGUGGGAUGCAUAUGCAGGAAACAGCCAGCUCAUCAGAACGAAUCCUAGAGACAGCAGAUUGAUCGAUCUUACUCCAGGAUUCCCGCGAACGGAUCAAAGCACUGGACGUAUCGACGAAUGUAUCGCAAGAACUGCAAGAGCAAGUAAAACUACCUUCAUUUUUUUUAAAAUAUAUCAUACCGUUAACUUUAUACAUCAUUGUGUCUGGAUGCUUAUAGUACUUGCUCUAAACUAGUCACUCCAUUCUAAAUUGAUCGUCUUACAUGUUUAUGCACCCAGACCAACGCUAAUUUAAAUCGCAUCAAUCAAGACACCAUACACAUAUUAUCUCACAAUACAUGCAUCGAUUAAAAUAUCAUACCAACUACAUCCUCCUUGCUACAUCAAUUGUAUUCCGAUGAAAUCCGUGUUCAUGCGGUUAUAUGAUGAUCAAUUUAACAAAAUUAUUAUAUGAUGAUCAAUUUGAGAACGAGAGAGAGUCGGCGUGGAUCUCGAAGCUAGUAAGAUCAUUACUGUAAUCUCUCUAUUUUAACUAGUGGUUGCGCAAAUCUCAAGGGAAGAAAAAUGUUUGCCCCCAACAAAUGGCUGCACUAAUUGGGGCUAAUUGUAUAUAGUAUAUAUAUACAGGAAAACUCGAUCGGUUGCUCAGUUGCAGGCUUGUUGUAGCUGGAGUAGCUAGCUACCUCUCACACGUACGUAAGGUCACACUAGCCACUAGCUAGGUACUGACUGAUCAAACCAGGAGAGGAAAUUAACCCGAUCGAUCAGCCAGCAGAGAGACCAAAGAAAUUAAGAUGGUGGUGAGUGCAUCCAUGGGGGUGAUGAACCCGCUGAUGGCAAAGCUCACCACGCUCAUGGGCGACGAGUACAAGAAGCUCAAGGGGCUCAGGAAGCAGGUCUCCUUCCUCAAGGAUGAGCUCACCACCAUGAGCGCUUUCCUCGAGAAGCUCGCGCUCAUGGAUGAUGAUGAUGAUGGUGAGCUCGAUCCUCUGGCCAAGGACUGGAGGAACCACGUCAGGGAGAUGGCCUAUGACAUGGAAGACUGCAUUGAUGAUUACUUCACAAGUCAUCUUGAUCAUCGUUACUCUUCCUCAGAUGCAGGGUUAAUCCGCAAGAUAGCUCGCCGUCUCAGGGCAUUGCGGGUGCGUCAUCGCAUAGCCAGCCAGAUCAAUGAGCUCAAGGCUCGUGUGGUCGAGGCAAAUGAGCGUCGCGUGAGAUACAGGCUUGAUGACUGUAACAACAAACAUGGUGUUUCUGCCAAUCCUGCUAUAGAUCCACGGAUAACAUCGCUCUACCAAAAUGCCGGGAGUCUUGUGGGUAUUGAUGGCCCAAGCCAAGAACUAAUCCAGCUGUUGUCGUUAGAUCGUGAUACCGAUCAACGACAACUCAAAGUGGUGUCCGUCGUGGGAUUUGGAGGUCUCGGUAAAACAACUCUUGCAAAAUAUGUGUACGACAAGAUCGGGCAUCAAUUCGAUUGCACGGCAUUCGUCUCAGUAUCCCACAAACCUGACAUAACAAGGAUCCUCAGUAGCAUCCAAUCCAAGCUUGACAUAGGGGGCACGUCUCAAGCUUGCGACGACGUGCAACAACUCAUCGACGACAUACGAGCCUAUCUGGAGCAUGAAAGGUAUAUUAUUAUAGUCGAUGACCUGUGGAAACAAGAAGCAUGGGUUAUUAUUAGUUGUGCCUUUCCAAACAAUGGCAAAGGUAGCAGAGUGAUAGUAACCACACGAGUGAAAGAUGUGGCCAGGUUGGCAUGUGGCAAGGAUGGACAAAUUUACAAAAUACAGCCUCUGAACAAUAAGGACUCAAGAAAGUUAUUCUUCGAUAGAGUAUUUAGGCCUGAAGAUAGUUGUGUCCUGCAGUAUGAAGAAAUUUCAACUGAAAUCUUAAAGAAGUGUAGUGGCUUGCCACUUGCAAUUGUUACUGUAGGGAGCCUCUUAGCCUGUCGACCAAGAACAAUGGAAGAAUGGAAGAGCAUACGGGAUUCUUUGGGUGCCCCGUUUGACAAAAACAAGAGCUUGGAAGGCAUGAGGAAUAUUUUAAACCUGAGUUACAAGAAUCUUCCUCUUCAUCUCAAAACAUGCCUCCUAUAUAUUGGUAAAUAUCCAGAGGACUAUGAGAUCGGGAGGGAUGAACUAGUUACGGAGUGGAUAGCUGAAGGUAUUAUGGGUAACCCUCAUGGGGAAAACUUGGAGGCUACUGGUAAUGGCUACUUCAGUGAGCUUAUCAACAGGGGCUUGAUUCAACCAGAGAGCACCGGCUAUGGUGGGGAGGUGUUGAGUUGCAAGGUGCAUGAUAUGAUGCUUGAUCUGAUCCUCAUCAAGUGUGCAGAAGAUAAUUUUGUCAGCGUUGCACACAGUUGUAAAGACUACAUGCGCAUGGCUAUGCACCAUGAGCGGAGUUGCAAUAAGGUCCGUCGGCUAUCCCUGCAGUGCAAGGCUGCAAGAUCAGAUUGCGCAAUUGAGGGCAGCGUCAUUUCUACAAGCAUGGCUCGUGCUCGAUCAGUUUCAGUGUUUGGUGAGUGUUCACGUGGGCUCCCAUUUCUGAUGCUAUCCAAGUAUAUACGGGUGGUGCACAUCGAAUUGGAAGGCCAUGGCGGUCAAGUCGACCUCACUGCCAUUAGCCAUGUGCUUCAAUUGAGGUAUUUGAGAGUGGAGACGCCUGGUUGUGAGAUAGAUCUCCCCAGCAAAAUAUGUGGGCUCGUGCAUUUGGAGACAUUGUCAAUAUUUUCCCAUAAAGCUGUAAGUCGGCUCCCUUCAGAUAUUAGCAGUCUUCCCCGCUUGUCAGUCCUGUCCCUGGUGGUUCCAUGGGCUACAAGGCUACCCAACAAGUUAAACAAGCUAAAAGGGUCACUACGCAGUCUCACCAUACUAUUCAAUCCCCCGGAUGCGUUAGGCAUGGAGGCCAUUGGUGAGCUGAAAAAUCUAAGGGACCUAAACAUCUCUGUUAACAGGUGGCGGGACGAUGAGAUCCUUAGCCUUUAUGCUCUGGGGUCUUCCAUUGGAAAACUGGAUGAACUCAGGAGUUUGCAAAUUCAUGUCCCACCUGCUACCUUAGGUGAUGUUGACCUGCUGGGCUCAUUACCCAUUUUUCCUCAAAGUAUCGAGAGACUAAUACUACACGGUUGGUGCUUCUCCAAAGUACCUCGAUGGAUCAACGGUACUCUCCGUAACCUCCAACAUGUGUUGCUGGAGGUAUCGGAGACAUCGAGUAGCGAGGUUGACCUUCUUGGUGAACUACCCUCCCUCGCCGACCUCGAGCUGAGAGUAGGACUCAAGACAAGAGAUGUCAUCGCGUUCGGUGGCACUAGAGCAUCAUUAUUCCCUGCUCUCCUGAAACUCAAGCUGCGUGUGGGUGAACACGUUGCCUCAAGGCUGCAGUUCCAGGCAGGGGUGAUGCCCAAGCUCCAAAGCCUCCAUCUGUGGUUCCGGAAUUGUGAGUCGGGCAUUCACGUAACACCGGAGGGUAUGCAGCACCUCCUGAGCCUCCAAAGCAUCUGCGUGGAGAUAUACCUCCGGGAUGAGGAGCUGAAAGCAACUUAUCCAUGGGACGCCAUGGAGCGUGCGUUCAGGGAAAUCACUGGAGCAAACCCCAACCGGCCUUCCUUCAAAUUUGUCAAGCAAGUCUGAUUUCUACAGCUGACUAUAAAUACUUGUCCCUCUUUUCGUUUUAUUGGUUUCAUAUGUAUGGUUUCCUUCAUUGGAUUGAUAAUACUCAUCUUCAUCUUUUCUUCUAUACUAUUAUUUUUUUCCCGACCAAAUUUUAUUAAGAGGAAAAGGAGGUUUACUAGUGUUUACAAGAUAGACAUUAAGCUGUCAAGGCGGGGUGACAACCAAACCGAUAUCAGCCCAAAAAGACAAAGACAGGGCAAGGGUUUCCAUUAAUCACACUCUCGAAAAAUCCUUGCUUCCUUCCAAAUGAUGAUUUCCUCCCUUAUAUCAUUAUACACCCGUGCCACUGAGUACGAACGUUGUUCGAAGAUCCUUGCAUUACGCUCUUUCUAGAUGAACCAGCAAACCAUCAUAAAAAGGGAGUCUAUAUAUACUAUAAUAAUGCACCAACUUUUCUUUUCUACAUUCACCGACCUAACAUUAAUGACCUGUGUUUCCACAGUCAUGAUAUCUCCUACAUCCGCCUCUUGUGCACACACAAAUCAGCAGCCAUCCUCAAAUAAAGCAUCUUUCCUUAGACGCCUUCCUGGGAUCUAAAGCAGAAUGAUCUGCCUGCAGUAAUCAGCAUACUCAUUCAAUUCAGAAAUAACAAUGGUGAGAUAAGUAUUGUACCAAUCAUGUAAUUUAAGGUGGCUAAAACUGGAUUAAAUUAAUCAACAGCAGAUUUGUAAGACCAACAAGUGAGAUUCAUGACAUGAAUCAUUAAAACAUACAAGGAGUUUGGGGGUAAAUCUUAACCCUUCUAGUUGCACUAUUACUGCUACUACAACAUUCAGUGCAGAAUCUUCGAUUGGCAUAACCUCUACUGGCUAAAGGUACAAGUACAGUUGAUGAUUAUUUUACCAAUUAAGUCCCAACCAUGAUUAACCAUCCCAAAUUAGUGACUUAAAAUUAUAAGCACACUAGUGGCAGCUGAUGAUUAUUCUCCUAAUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.12%
ME_num:
MEP:
4.67%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.23456645398859 | 0.0427807400537273 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.38405977919129 | 0.0334573307754707 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.19716956720034 | 0.0373877763941518 |