Chr:
Chr7
Start:
22487424
End:
22488722
Strand:
+
Ref_name:
LOC4343604
Sequence
(XM_015791053.2):
ACCUCCCCUUCUAGAGUAGUGUUAGUCUUAGCGAAUCCAGCAGCAGAAGCAGCAGCAGCAGCUCAGCCGCCGCCGAUGGCGUCCACGAUCAUGGCCCCAACCUCCCGCGUCCUCGCCGCCAAGACCCCCUUCCUCGGCCAUCCCCGCCCCUCCAAUGCCCCCGUCCGCGACAUCGCCGCCGCCGCCACCGGCCGCAUCACCAUGAGCAAGGAGCUGUGGUACGGGCCGGAUAGGGUGAAGUACCUGGGGCCAUUCUCGGCGCAGACGCCGUCGUACCUGAGGGGCGAGUUCCCGGGCGACUACGGGUGGGACACGGCGGGGCUCUCCGCGGACCCGGAGGCGUUCGCGAGGAACAGGGCGCUGGAGGUGAUCCACGGCCGGUGGGCGAUGCUCGGCGCGCUGGGCUGCAUCACGCCGGAGGUGCUCGAGAAGUGGGUGCGCGUCGACUUCAAGGAGCCCGUGUGGUUCAAGGCCGGCGCCCAGAUCUUCUCCGACGGCGGCCUCGACUACCUCGGCAACCCCAACCUGGUGCACGCCCAGAGCAUCCUCGCCGUGCUGGGAUUCCAGGUCGUCCUCAUGGGCCUCGUCGAGGGCUACCGCAUCAACGGCCUCCCCGGCGUCGGCGACGGCAACGACCUCUACCCCGGCGGCCAGUACUUCGACCCGCUCGGCCUCGCCGACGACCCCGUCACCUUCGCCGAGCUCAAGGUCAAGGAGAUCAAGAAUGGCCGCCUCGCCAUGUUCUCCAUGUUCGGCUUCUUCGUCCAGGCCAUCGUCACCGGCAAGGGCCCCUUGGAGAACCUGCUCGACCACCUCGCCGACCCCGUCGCCAACAACGCCUGGGUCUACGCCACCAAGUUCACGCCGGGCUCGUGAAUGGCCCAGCCGCCAUUGUAGACUACUCUCUCUCUCCAUCGCUCGAUGUACCAAUGCUUGCACAGAUUGUACGAUGCUGUGAUGAAUCUGAUAUGAUCCAUCCAGAAUUCAGAAACUGAAAAAAGUUGGGGUUUGCAACUUAUGUGUCAGCUGCUGCUUUAAGCUUAGUUAACUCUUUUGAUGUUUUAAUUUGUACAUUUGUGUACUUUGUAAUGAUCCAUACGAGACCUAGUGUUUGAUUAUUGCUAAUUUGCUGUGGCAUUUUCUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.05%
ME_num:
MEP:
20.73%
HE_num:
HEP:
76.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
2888.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -2.04513392455194 | 0.0027331342126936 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 2.56092594095475 | 9.13305163026516e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.23251304475481 | 2.12392635830817e-52 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.26654817063338 | 5.07423608342706e-20 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.51111061329407 | 4.24496489182574e-48 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.70402043199688 | 5.66948130344152e-116 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.30131889477344 | 6.69510556351206e-09 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.6475230177551 | 3.29844694739302e-05 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.39823521557227 | 2.81295582333975e-05 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -3.61395510103309 | 2.37329876341649e-13 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.68675719340729 | 8.47889317816892e-06 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.01668651131188 | 7.91874439808591e-14 |
| 13 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.0659861655433 | 1.4074351437093e-07 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.03714387003937 | 8.78536722896237e-41 |
| 15 | Nipponbare // shoot // "none,7_days_post_infection"--/--Nipponbare // shoot // "roots_rot_nematode_(H._oryzae),7_days_post_infection" | -1.1180074393592 | 0.0497190138116495 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.47786488594298 | 0.000443806672745737 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.88498269105489 | 1.31598364220599e-11 |
| 18 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.33422454595449 | 3.13280518669987e-163 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.44414852514764 | 1.3027485573459e-135 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.51186958166985 | 2.12960168549532e-06 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.05171775793078 | 0.0144826134230069 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.41255495913804 | 5.27818957734103e-17 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.54655939444786 | 1.14468855575921e-08 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.30972296188358 | 4.32242163161216e-16 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.77141645624482 | 0.000172519973343304 |
| 26 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.33379278150633 | 1.01307099256812e-19 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.02084762448932 | 3.00197248793252e-10 |
| 28 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.33385630300727 | 7.76968985065346e-20 |
| 29 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.33381718672327 | 1.05150639079316e-19 |
| 30 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.12127575185842 | 2.8664832291126e-25 |
| 31 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.52427099922129 | 0.0107468557587766 |
| 32 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.18869211336052 | 0 |
| 33 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -10.5658104793213 | 2.91104963497512e-33 |
| 34 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.34754601018772 | 3.73578807018775e-05 |
| 35 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.51495761034022 | 2.82013047654584e-12 |
| 36 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.26420745899569 | 7.89772422442388e-31 |