OSA-PHAS4343494


Function Link


Basic Info

Chr:

Chr7

Start:

21299651

End:

21311431

Strand:

-

Ref_name:

LOC4343494

Sequence
(XR_001547733.2):

AUUAUACUAAAUUCCCGUAGCAAUGAGCGGGUUUCAUCUGGUUUACGCCUCGUUGCUGCCAGACAAGCAGGGGGCACUGGGCAGAGCCGCACAGGGAAGUGUAAGACCGAAGAAGGAACAAACUCCUCUCGAUUCUCAAAGCCACCGCCGAUGGCCGUCGGCGACGACGCCGCUCCGGCGGCGACCAAGAUCUCCAUCUCCGGCGCGGCUCUCGCGGCGCUCCUCCAGCGCUGCGGUAUGGCCGACGGCGACUGCGACGGCCUCCUCUCCGGGCGCGCCUCAACCACCCCGGCUCCGCCCCCUUCCCUCUCCGACUACGACGACCACGCGCCGGCCCAGUCCGCCCCCGCCAUCUCCCUCUCCAUCUCCGGCCAUUCCUCCCUCUCCCGCCCCUCCUCCCUCUCCGAUCCCCUCGGUCGCUUCCACCCCUCCGCCUCCGCCGCCGCCGCCGGCCCCGCCUCGAUCGGCUUCUUCUCCUCCCGCCGCCGCACCGCCCUCCGCCCCUCCAUGCGCGAGCUCUCCCUCGCCCACUCCCUCUCCAAAUCCCUCGCGCUCGCCCACCCCCUCCUCUUCCUCCUCGUCUCCCCUUCCUCCCCCAACCUCUCUACCCACUCCUACGACCACCGCGCCUUCCUCCUCAUCGGCUCCCGCCUCGUCCCGACCUCGCUCCAUGUCGUCAAUGUCGGCCCCGUCUUCCGGGACCAGUACCACUCCUUCGCUCCCGACUCUCCGAUGCCGUGGCUGCCGCUUGCACAGCACUCCUCGUCGUCGUCGGCGGCAGCAGGCGACGCGCACACCAUUGGGGAGCAGAAUGCGGUGGAUGGGGUGGUGGAUGGGUUCGGGCUAGGGAAGCUGCAGGGGAUCCUGGGCUCCGUGGCGGGGCAGGCGGCGGAGAUGGAUGGCAUGUAUGCAGGAAUGCUCAGGAGGCUGGAGAAGCUUGCCAGGGAGGUGGAGAAGAGCAAUCUCCUUGUGCUUAAGCAGGAAAAUCGGAACCUGCUGUUGAGGUUCAGAUAUGCAGGGUUGGAAUAGCGCCAAUGUUUUAUCGGUCUUAGCAAGGUAAAAACAUACCUUCUCCGACUGGUUGGGAGAUAGAUGGCAAGUACCUUGAUACUACAGAAAAGGACGUAAAAAGCAAUUCGAGAGGUUUAAGCGUGAUUUUGAUGAGUAUGGUGUUAAUCUAAUGUGUGAUUCCUGGACUCGACUGACGGGUAUGACUAUCAUCAACUUUUUGAUAUAUUGCAAUGGAAUAAUGUUUCUUCACAAGUCCAUUGAUGCGACGGGCCAAAGCUAGGAUGCUAACUUCAUAUAGAAGGAGAUAAGGAAUGUGGUAAACGAAGUACAUCCUCAACAUGUCGUGUAGUUUAUCAUUGACAAUGGGUCAAUUUACAAGAAGGCUUGCAUACUACUGCAGCAAGAGUACCCAACUAUUGUGUGGCAACCUUGCAUGGCUCACACAAUUAAUUUGAUGCUUAAGGAUGUUGAAAAAAAAUGCCAAACCAUGAUAUGGUGAUUGAGAGUGCAAAGAAAAUUUGUAGAUGUUUUGUAGCUACGGCAUUGAACCCUUGGACGCACUGCGCAUACAGUGUGACCGUCUUCCAAGACCUCCGUCAGGCCUUCGAGUGGAUGAUGAACAUGGACAUGGCCGCUGCCGUUUUGUUGGAGGUUGAGAUGUAUCGGCGUAAGAGUGACGAAUUUGGGAGGACGCUUGCAAGAAAGAUCUAACGCUUGCAAGAAAGACCUCCGUUUUGUUUGAUGUAUGCUUUUGAUAAUGCAAUAUCAAAAGUCCUAAUGCUUUCGACGUAUCUAGAAUUAUAAAAUGACAUGUUAGUCGGCAUUUGCAGCACAAUGGUGGUCUAUGUUUACAUCAGACACGCCGAAUUUGAAGAAAUUUGUGUUGCGUUUGGUUGGUCAGUAUAACUCUUCAAGUUAAUAUGAUCGGAAUUGUAGCAUAUUUGCAUUCGUACAGACAAAGAUUCGUUACAAAGUUACACACAGCAAGCUCAACAAGCUUGUCUAUGUCAAAUAUAACCUUCGCAGUCGAAAUCAACAAACAAAUGCCAAGUUAGGAAGGACGAUGAUGAUCCCUUUCAAAGUCCAGCGGACCUAUCAUUCUACGACACUAACAAUUAAAUUAGAGACCGAAUGGACAAUGUUUGGUCCAAUUCUUGCCCUGAACUAGAUGAAGACUCAACUGAGAGUGAAUCCCCCAUACCUAGUCCACCUGUAGCCAACCUAGUGGACUUGACUGACCUUCGCAAGACCACAAGGGCGUCUAUUAUUGCUGAGUAGGCUGAUAUGAAUAUGUGACAGUCAUAUUGGAAAAAGAAAGACUCAAUAGCGGCCAAAACCACCUCCAUCUAAAAAAGUGAAGGCCAAAGGUUCAUCAACACGGCCGAGGAGCAUUGAUAGCAACGAAGAGACUCAAGGGAGCCCAGACUACCAAUAGUCCAAUGAUAGUAGCUUAAGAAUUGAUACAAAUGACGGAGACAAUGGUGGUCAAGGAGGCCAAGGCGCCACUGAUGCGCCUUCUAGUGGUCACACAACAAUGUCAGAUGAGGCUAACUUCACUUACGCUACUAAGGACAAGGAUCAUGGUGUUCCAAGUUCUCAACGAACUAACGUUACUCGAGAGGGUGACAACAGCAACAACAGUUUUACACACCAUAACAUAGCUAUAGCUUAUCCAAUAUCUCUAGCUGUUGACGAGAAACACAGUGGCUUGGGAGAUCUGCUUAACUCCAGUGCAGGUGCAAAGCUUGCCUCGAGUGUGCUAAGGGCGUGCCAGCUGGUUUGAUUCUGCAACCAGCAAGGAAACAACAAGCAAAGUUGCCGAUAGCUGAUCGGCUGAUAGGCCGAUGACAUAUCGUUAGUGAUCCUAGCUGAUAUAGUUGGACCAGAUCGGCUAUGGAUUGAUGUAUGAAUUAAGCAUAAACCUUAAAUAUGCCUCAUCGGCUGUAGUAUCAUCAAAUGAGUUUGUCAAGUAUGAGUCGGACGAUACUAUAUGAAUAGUCGAUGAAACAAUAUUUAGAACAAGAUAGAUAGAUAAAGAUAAUAUACCAGCUAAUACUCUAGUACAAACUUAUAUAAACAAAUCAAUCUAUAUAAACAUAUCAAAUCAUGAUCAGUUAAUAAUUUAGAUAACCCAACCGAUACUGAUCUAACUUGAUAUGGUUAUAUAGGAUGAUCUAUCUAUAUAAAUGGCAAAUAUACAUAAAACUAGUACAAGCAGCAUGUAUAUUAGAUAAGAUCGGCUGAAACUCCGAUACUAUCUCUAAUUAUGAUUAAUUCUAGGUUAGUUUUUAGGGUUCUAAACAAGACUAGGGAUGAUGUAUCUCAAAGUAAGUAGAGAAAUCUAAAGUCUAAACAAUCAAGGAAUUAACCACUUUUUAAGAUUGUAGAUGCCUUAGUUAAUCCAAUGCAAUUUAGUCGAUACUGGCAGGAACCCUAAAGCGAGAUAUGACUAAAUUGA

Sequence
(XR_003243274.1):

AUUAUACUAAAUUCCCGUAGCAAUGAGCGGGUUUCAUCUGGUUUACGCCUCGUUGCUGCCAGACAAGCAGGGGGCACUGGGCAGAGCCGCACAGGGAAGUGUAAGACCGAAGAAGGAACAAACUCCUCUCGAUUCUCAAAGCCACCGCCGAUGGCCGUCGGCGACGACGCCGCUCCGGCGGCGACCAAGAUCUCCAUCUCCGGCGCGGCUCUCGCGGCGCUCCUCCAGCGCUGCGGUAUGGCCGACGGCGACUGCGACGGCCUCCUCUCCGGGCGCGCCUCAACCACCCCGGCUCCGCCCCCUUCCCUCUCCGACUACGACGACCACGCGCCGGCCCAGUCCGCCCCCGCCAUCUCCCUCUCCAUCUCCGGCCAUUCCUCCCUCUCCCGCCCCUCCUCCCUCUCCGAUCCCCUCGGUCGCUUCCACCCCUCCGCCUCCGCCGCCGCCGCCGGCCCCGCCUCGAUCGGCUUCUUCUCCUCCCGCCGCCGCACCGCCCUCCGCCCCUCCAUGCGCGAGCUCUCCCUCGCCCACUCCCUCUCCAAAUCCCUCGCGCUCGCCCACCCCCUCCUCUUCCUCCUCGUCUCCCCUUCCUCCCCCAACCUCUCUACCCACUCCUACGACCACCGCGCCUUCCUCCUCAUCGGCUCCCGCCUCGUCCCGACCUCGCUCCAUGUCGUCAAUGUCGGCCCCGUCUUCCGGGACCAGUACCACUCCUUCGCUCCCGACUCUCCGAUGCCGUGGCUGCCGCUUGCACAGCACUCCUCGUCGUCGUCGGCGGCAGCAGGCGACGCGCACACCAUUGGGGAGCAGAAUGCGGUGGAUGGGGUGGUGGAUGGGUUCGGGCUAGGGAAGCUGCAGGGGAUCCUGGGCUCCGUGGCGGGGCAGGCGGCGGAGAUGGAUGGCAUGUAUGCAGGAAUGCUCAGGAGGCUGGAGAAGCUUGCCAGGGAGGUGGAGAAGAGCAAUCUCCUUGUGCUUAAGCAGGAAAAUCGGAACCUGCUGUUGAGGUUCAGAUAUGCAGGGUUGGAAUAGCGCCAAUGUUUUAUCGGUCUUAGCAAGGUAAAAACAUACCUUCUCCGACUGGUUGGGAGAUAGAUGGCAAGUACCUUGAUACUACAGAAAAGGACGUAAAAAGCAAUUCGAGAGGUUUAAGCGUGAUUUUGAUGAGUAUGGUGUUAAUCUAAUGUGUGAUUCCUGGACUCGACUGACGGGUAUGACUAUCAUCAACUUUUUGAUAUAUUGCAAUGGAAUAAUGUUUCUUCACAAGUCCAUUGAUGCGACGGGCCAAAGCUAGGAUGCUAACUUCAUAUAGAAGGUGACAAUUUUGAUGCAAGAAAUUUACGUCAUAUGUUAUCAAGUUUCGGGUGAUGGACUUAUUUUUAUUUUGUGAUUUACUAAUGUAGGAGAUAAGGAAUGUGGUAAACGAAGUACAUCCUCAACAUGUCGUGUAGUUUAUCAUUGACAAUGGGUCAAUUUACAAGAAGGCUUGCAUACUACUGCAGCAAGAGUACCCAACUAUUGUGUGGCAACCUUGCAUGGCUCACACAAUUAAUUUGAUGCUUAAGGAUGUUGAAAAAAAAUGCCAAACCAUGAUAUGGUGAUUGAGAGUGCAAAGAAAAUUUGUAGAUGUUUUGUAGCUACGGCAUUGAACCCUUGGACGCACUGCGCAUACAGUGUGACCGUCUUCCAAGACCUCCGUCAGGCCUUCGAGUGGAUGAUGAACAUGGACAUGGCCGCUGCCGUUUUGUUGGAGGUUGAGAUGUAUCGGCGUAAGAGUGACGAAUUUGGGAGGACGCUUGCAAGAAAGAUCUAACGCUUGCAAGAAAGACCUCCGUUUUGUUUGAUGUAUGCUUUUGAUAAUGCAAUAUCAAAAGUCCUAAUGCUUUCGACGUAUCUAGAAUUAUAAAAUGACAUGUUAGUCGGCAUUUGCAGCACAAUGGUGGUCUAUGUUUACAUCAGACACGCCGAAUUUGAAGAAAUUUGUGUUGCGUUUGGUUGGUCAGUAUAACUCUUCAAGUUAAUAUGAUCGGAAUUGUAGCAUAUUUGCAUUCGUACAGACAAAGAUUCGUUACAAAGUUACACACAGCAAGCUCAACAAGCUUGUCUAUGUCAAAUAUAACCUUCGCAGUCGAAAUCAACAAACAAAUGCCAAGUUAGGAAGGACGAUGAUGAUCCCUUUCAAAGUCCAGCGGACCUAUCAUUCUACGACACUAACAAUUAAAUUAGAGACCGAAUGGACAAUGUUUGGUCCAAUUCUUGCCCUGAACUAGAUGAAGACUCAACUGAGAGUGAAUCCCCCAUACCUAGUCCACCUGUAGCCAACCUAGUGGACUUGACUGACCUUCGCAAGACCACAAGGGCGUCUAUUAUUGCUGAGUAGGCUGAUAUGAAUAUGUGACAGUCAUAUUGGAAAAAGAAAGACUCAAUAGCGGCCAAAACCACCUCCAUCUAAAAAAGUGAAGGCCAAAGGUUCAUCAACACGGCCGAGGAGCAUUGAUAGCAACGAAGAGACUCAAGGGAGCCCAGACUACCAAUAGUCCAAUGAUAGUAGCUUAAGAAUUGAUACAAAUGACGGAGACAAUGGUGGUCAAGGAGGCCAAGGCGCCACUGAUGCGCCUUCUAGUGGUCACACAACAAUGUCAGAUGAGGCUAACUUCACUUACGCUACUAAGGACAAGGAUCAUGGUGUUCCAAGUUCUCAACGAACUAACGUUACUCGAGAGGGUGACAACAGCAACAACAGUUUUACACACCAUAACAUAGCUAUAGCUUAUCCAAUAUCUCUAGCUGUUGACGAGAAACACAGUGGCUUGGGAGAUCUGCUUAACUCCAGUGCAGGUGCAAAGCUUGCCUCGAGUGUGCUAAGGGCGUGCCAGCUGGUUUGAUUCUGCAACCAGCAAGGAAACAACAAGCAAAGUUGCCGAUAGCUGAUCGGCUGAUAGGCCGAUGACAUAUCGUUAGUGAUCCUAGCUGAUAUAGUUGGACCAGAUCGGCUAUGGAUUGAUGUAUGAAUUAAGCAUAAACCUUAAAUAUGCCUCAUCGGCUGUAGUAUCAUCAAAUGAGUUUGUCAAGUAUGAGUCGGACGAUACUAUAUGAAUAGUCGAUGAAACAAUAUUUAGAACAAGAUAGAUAGAUAAAGAUAAUAUACCAGCUAAUACUCUAGUACAAACUUAUAUAAACAAAUCAAUCUAUAUAAACAUAUCAAAUCAUGAUCAGUUAAUAAUUUAGAUAACCCAACCGAUACUGAUCUAACUUGAUAUGGUUAUAUAGGAUGAUCUAUCUAUAUAAAUGGCAAAUAUACAUAAAACUAGUACAAGCAGCAUGUAUAUUAGAUAAGAUCGGCUGAAACUCCGAUACUAUCUCUAAUUAUGAUUAAUUCUAGGUUAGUUUUUAGGGUUCUAAACAAGACUAGGGAUGAUGUAUCUCAAAGUAAGUAGAGAAAUCUAAAGUCUAAACAAUCAAGGAAUUAACCACUUUUUAAGAUUGUAGAUGCCUUAGUUAAUCCAAUGCAAUUUAGUCGAUACUGGCAGGAACCCUAAAGCGAGAUAUGACUAAAUUGA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

13

LEP:

2.64%

ME_num:

377

MEP:

76.63%

HE_num:

101

HEP:

20.53%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.71

Avg Expression:

32.16

Tip: OSA-PHAS4343494 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h2.014065197105850.00254185083249828
2Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"1.891664593940061.05572789127022e-15
3Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.167546377825870.000977605910838747