OSA-PHAS4343016


Function Link


Basic Info

Chr:

Chr7

Start:

13057841

End:

13068304

Strand:

-

Ref_name:

LOC4343016

Sequence
(XM_015789076.2):

AGAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGGUGAUGAUGUGUCAAAUAAGGGUCAAAUGGUGCAAAAUUGAACAUUGACAAUGAAAGCAAGCAGAGAUAAAAAAUAUUACUUGUGUAGAUCAACUCUAGUUGAGAUGUCCUUAACAAGACAUUCUUGUCUCUUCCCAAACUAUCGCAUGACAUGGUACGGAAGGUGGUACUCAACUGCCCAGAAACAAAUCAAUUGGCACUGGUACAUGAAGUAAUCGGAGCCUCGAUUGCACAACGAGAUCAGUGUAAGACUUGUAGCCUCAGUGGUGUGGUAUGGUAACCACUCAAUCUAUAAAUGUUGAAGAGUUGUCGUAGGUUAGUAUUUCAAUCAUAUAAGUAAAUGACGAAUUAGAAGUGAUAGUGGAAGUACUUAUAUGUGUAGGCUGUAGGCAGUCCAUCACGUUGAUGUACUGCUUGUAUGCGACGUCCCGGUGAGCAUGUGCAGUGGCUAUACUCUCAAAUAGGUAGGCCACUGUCUUCUCCAUGUCUGGCUCAUUGUAGGGCCAAAGGGUAAAGCUUUGCCUCCACUUAGGCUUGCCAACCGGUAGUCUUAGCCACAUCCACAUCUGAAUCACCAGCACACAACCA

Sequence
(XR_001547108.2):

GCAAGAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGUCCAGAGAGCUUCUUAGGAGUGUGAAUGAAAUGGGGCAUGCCCUCCGAUCUCCAAGGGGUGGUAAGGAUACGGAGAACAAACUUCGCAAUGUCUUAGAGGUUGCAGGUCCGUUGGAUUGGACGACGUGUACCAACUGCGGAGAGUAUCACUACCACUACCUUAAUCCGUGCGUCCAAGUACCGCUCGACACUCCAUCAGGAUAGAAGAGCGUGAACAAGUUGGUGGUUUGUCAUCGUCACGCAUUCCACAGGGAAGGGGAAAGGGGAAGGCACAGGCUCCACCUAGCGGCGACGAUGAGGAGGAGGAUGAGGGCUACAUCACACCAGACGUCGAGGAGAUAGGCAUGUCGCAACUUCCCGAUGCGCCUCAUGCGUCACAGCCUACCCAAUACAACUUACGAUCCACUCGGCCAGCGAAAAAGAGAUAUACUCAGGGCUUGCAAGCUAUUCGGCGCCAACGGAAAAAGUGAUUUCUACGAAGUUGAUCUUUGUAUCAUGUGUUAACUUGUUUCACAGACUUUUGGAUUUGUUGGUUGUAUGAAGUAUGUGAUGGACUUGUAGUAUUGUUUGAUGUGUGGAAUGUGUGAUGGAGUUGUGGACUUUUUUCGUCAAUCUAGUUAGCUUGUGGACUAUGCGAUAUGUGAUUUGGUGUCAAUAUUUGCUGUGGAACCUGUUUUGUCGAUA

Sequence
(XR_001547109.2):

GCAAGAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGUCCAGAGAGCUUCUUAGGAGUGUGAAUGAAAUGGGGCAUGCCCUCCGAUCUCCAAGGGGUGUUAGCCAAAGGUGCCGCAAACUUGCUGCAAGAUUAGGUUGCAGGUCCGUUGGAUUGGACGACGUGUACCAACUGCGGAGAGUAUCACUACCACUACCUUAAUCCGUGCGUCCAAGUACCGCUCGACACUCCAUCAGGAUAGAAGAGCGUGAACAAGUUGGUGGUUUGUCAUCGUCACGCAUUCCACAGGGAAGGGGAAAGGGGAAGGCACAGGCUCCACCUAGCGGCGACGAUGAGGAGGAGGAUGAGGGCUACAUCACACCAGACGUCGAGGAGAUAGGCAUGUCGCAACUUCCCGAUGCGCCUCAUGCGUCACAGCCUACCCAAUACAACUUACGAUCCACUCGGCCAGCGAAAAAGAGAUAUACUCAGGGCUUGCAAGCUAUUCGGCGCCAACGGAAAAAGUGAUUUCUACGAAGUUGAUCUUUGUAUCAUGUGUUAACUUGUUUCACAGACUUUUGGAUUUGUUGGUUGUAUGAAGUAUGUGAUGGACUUGUAGUAUUGUUUGAUGUGUGGAAUGUGUGAUGGAGUUGUGGACUUUUUUCGUCAAUCUAGUUAGCUUGUGGACUAUGCGAUAUGUGAUUUGGUGUCAAUAUUUGCUGUGGAACCUGUUUUGUCGAUA

Sequence
(XR_001547110.2):

CAAGAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGUCCAGAGAGCUUCUUAGGAGUGUGAAUGAAAUGGGGCAUGCCCUCCGAUCUCCAAGGGGUGGUAAGGAUACGGAGAACAAACUUCGCAAUGUCUUAGAGUUAGCCAAAGGUGCCGCAAACUUGCUGCAAGAUUAGGUUGCAGGUCCGUUGGAUUGGACGACGUGUACCAACUGCGGAGAGUAUCACUACCACUACCUUAAUCCGUGCGUCCAAGUACCGCUCGACACUCCAUCAGGAUAGAAGAGCGUGAACAAGUUGGUGGUUUGUCAUCGUCACGCAUUCCACAGGGAAGGGGAAAGGGGAAGGCACAGGCUCCACCUAGCGGCGACGAUGAGGAGGAGGAUGAGGGCUACAUCACACCAGACGUCGAGGAGAUAGGCAUGUCGCAACUUCCCGAUGCGCCUCAUGCGUCACAGCCUACCCAAUACAACUUACGAUCCACUCGGCCAGCGAAAAAGAGAUAUACUCAGGGCUUGCAAGCUAUUCGGCGCCAACGGAAAAAGUGAUUUCUACGAAGUUGAUCUUUGUAUCAUGUGUUAACUUGUUUCACAGACUUUUGGAUUUGUUGGUUGUAUGAAGUAUGUGAUGGACUUGUAGUAUUGUUUGAUGUGUGGAAUGUGUGAUGGAGUUGUGGACUUUUUUCGUCAAUCUAGUUAGCUUGUGGACUAUGCGAUAUGUGAUUUGGUGUCAAUAUUUGCUGUGGAACCUGUUUUGUCGAUA

Sequence
(XR_003243466.1):

GAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGAGAGCUUCUUAGGAGUGUGAAUGAAAUGGGGCAUGCCCUCCGAUCUCCAAGGGGUGGUAAGGAUACGGAGAACAAACUUCGCAAUGUCUUAGAGGUUGCAGGUCCGUUGGAUUGGACGACGUGUACCAACUGCGGAGAGUAUCACUACCACUACCUUAAUCCGUGCGUCCAAGUACCGCUCGACACUCCAUCAGGAUAGAAGAGCGUGAACAAGUUGGUGGUUUGUCAUCGUCACGCAUUCCACAGGGAAGGGGAAAGGGGAAGGCACAGGCUCCACCUAGCGGCGACGAUGAGGAGGAGGAUGAGGGCUACAUCACACCAGACGUCGAGGAGAUAGGCAUGUCGCAACUUCCCGAUGCGCCUCAUGCGUCACAGCCUACCCAAUACAACUUACGAUCCACUCGGCCAGCGAAAAAGAGAUAUACUCAGGGCUUGCAAGCUAUUCGGCGCCAACGGAAAAAGUGAUUUCUACGAAGUUGAUCUUUGUAUCAUGUGUUAACUUGUUUCACAGACUUUUGGAUUUGUUGGUUGUAUGAAGUAUGUGAUGGACUUGUAGUAUUGUUUGAUGUGUGGAAUGUGUGAUGGAGUUGUGGACUUUUUUCGUCAAUCUAGUUAGCUUGUGGACUAUGCGAUAUGUGAUUUGGUGUCAAUAUUUGCUGUGGAACCUGUUUUGUCGAUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

2

LEP:

0.41%

ME_num:

411

MEP:

83.54%

HE_num:

78

HEP:

15.85%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.56

Avg Expression:

20.69

Tip: OSA-PHAS4343016 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.109405754138143.5426086548109e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.133647199921034.45962805805049e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.286773756816881.49360311945285e-08
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.475841410755725.4297814512473e-10
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.114074686974831.28842000182124e-07
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.154501129302671.75410444911092e-07
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.185969217738224.05238032386617e-09