Chr:
Chr7
Start:
13057841
End:
13068304
Strand:
-
Ref_name:
LOC4343016
Sequence
(XM_015789076.2):
AGAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGGUGAUGAUGUGUCAAAUAAGGGUCAAAUGGUGCAAAAUUGAACAUUGACAAUGAAAGCAAGCAGAGAUAAAAAAUAUUACUUGUGUAGAUCAACUCUAGUUGAGAUGUCCUUAACAAGACAUUCUUGUCUCUUCCCAAACUAUCGCAUGACAUGGUACGGAAGGUGGUACUCAACUGCCCAGAAACAAAUCAAUUGGCACUGGUACAUGAAGUAAUCGGAGCCUCGAUUGCACAACGAGAUCAGUGUAAGACUUGUAGCCUCAGUGGUGUGGUAUGGUAACCACUCAAUCUAUAAAUGUUGAAGAGUUGUCGUAGGUUAGUAUUUCAAUCAUAUAAGUAAAUGACGAAUUAGAAGUGAUAGUGGAAGUACUUAUAUGUGUAGGCUGUAGGCAGUCCAUCACGUUGAUGUACUGCUUGUAUGCGACGUCCCGGUGAGCAUGUGCAGUGGCUAUACUCUCAAAUAGGUAGGCCACUGUCUUCUCCAUGUCUGGCUCAUUGUAGGGCCAAAGGGUAAAGCUUUGCCUCCACUUAGGCUUGCCAACCGGUAGUCUUAGCCACAUCCACAUCUGAAUCACCAGCACACAACCA
Sequence
(XR_001547108.2):
GCAAGAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGUCCAGAGAGCUUCUUAGGAGUGUGAAUGAAAUGGGGCAUGCCCUCCGAUCUCCAAGGGGUGGUAAGGAUACGGAGAACAAACUUCGCAAUGUCUUAGAGGUUGCAGGUCCGUUGGAUUGGACGACGUGUACCAACUGCGGAGAGUAUCACUACCACUACCUUAAUCCGUGCGUCCAAGUACCGCUCGACACUCCAUCAGGAUAGAAGAGCGUGAACAAGUUGGUGGUUUGUCAUCGUCACGCAUUCCACAGGGAAGGGGAAAGGGGAAGGCACAGGCUCCACCUAGCGGCGACGAUGAGGAGGAGGAUGAGGGCUACAUCACACCAGACGUCGAGGAGAUAGGCAUGUCGCAACUUCCCGAUGCGCCUCAUGCGUCACAGCCUACCCAAUACAACUUACGAUCCACUCGGCCAGCGAAAAAGAGAUAUACUCAGGGCUUGCAAGCUAUUCGGCGCCAACGGAAAAAGUGAUUUCUACGAAGUUGAUCUUUGUAUCAUGUGUUAACUUGUUUCACAGACUUUUGGAUUUGUUGGUUGUAUGAAGUAUGUGAUGGACUUGUAGUAUUGUUUGAUGUGUGGAAUGUGUGAUGGAGUUGUGGACUUUUUUCGUCAAUCUAGUUAGCUUGUGGACUAUGCGAUAUGUGAUUUGGUGUCAAUAUUUGCUGUGGAACCUGUUUUGUCGAUA
Sequence
(XR_001547109.2):
GCAAGAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGUCCAGAGAGCUUCUUAGGAGUGUGAAUGAAAUGGGGCAUGCCCUCCGAUCUCCAAGGGGUGUUAGCCAAAGGUGCCGCAAACUUGCUGCAAGAUUAGGUUGCAGGUCCGUUGGAUUGGACGACGUGUACCAACUGCGGAGAGUAUCACUACCACUACCUUAAUCCGUGCGUCCAAGUACCGCUCGACACUCCAUCAGGAUAGAAGAGCGUGAACAAGUUGGUGGUUUGUCAUCGUCACGCAUUCCACAGGGAAGGGGAAAGGGGAAGGCACAGGCUCCACCUAGCGGCGACGAUGAGGAGGAGGAUGAGGGCUACAUCACACCAGACGUCGAGGAGAUAGGCAUGUCGCAACUUCCCGAUGCGCCUCAUGCGUCACAGCCUACCCAAUACAACUUACGAUCCACUCGGCCAGCGAAAAAGAGAUAUACUCAGGGCUUGCAAGCUAUUCGGCGCCAACGGAAAAAGUGAUUUCUACGAAGUUGAUCUUUGUAUCAUGUGUUAACUUGUUUCACAGACUUUUGGAUUUGUUGGUUGUAUGAAGUAUGUGAUGGACUUGUAGUAUUGUUUGAUGUGUGGAAUGUGUGAUGGAGUUGUGGACUUUUUUCGUCAAUCUAGUUAGCUUGUGGACUAUGCGAUAUGUGAUUUGGUGUCAAUAUUUGCUGUGGAACCUGUUUUGUCGAUA
Sequence
(XR_001547110.2):
CAAGAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGUCCAGAGAGCUUCUUAGGAGUGUGAAUGAAAUGGGGCAUGCCCUCCGAUCUCCAAGGGGUGGUAAGGAUACGGAGAACAAACUUCGCAAUGUCUUAGAGUUAGCCAAAGGUGCCGCAAACUUGCUGCAAGAUUAGGUUGCAGGUCCGUUGGAUUGGACGACGUGUACCAACUGCGGAGAGUAUCACUACCACUACCUUAAUCCGUGCGUCCAAGUACCGCUCGACACUCCAUCAGGAUAGAAGAGCGUGAACAAGUUGGUGGUUUGUCAUCGUCACGCAUUCCACAGGGAAGGGGAAAGGGGAAGGCACAGGCUCCACCUAGCGGCGACGAUGAGGAGGAGGAUGAGGGCUACAUCACACCAGACGUCGAGGAGAUAGGCAUGUCGCAACUUCCCGAUGCGCCUCAUGCGUCACAGCCUACCCAAUACAACUUACGAUCCACUCGGCCAGCGAAAAAGAGAUAUACUCAGGGCUUGCAAGCUAUUCGGCGCCAACGGAAAAAGUGAUUUCUACGAAGUUGAUCUUUGUAUCAUGUGUUAACUUGUUUCACAGACUUUUGGAUUUGUUGGUUGUAUGAAGUAUGUGAUGGACUUGUAGUAUUGUUUGAUGUGUGGAAUGUGUGAUGGAGUUGUGGACUUUUUUCGUCAAUCUAGUUAGCUUGUGGACUAUGCGAUAUGUGAUUUGGUGUCAAUAUUUGCUGUGGAACCUGUUUUGUCGAUA
Sequence
(XR_003243466.1):
GAAGCGAAGCUCGAUGGUCAGCAACGACAGGACACGGCUGCUAUUCCGCUUCUUUCCGCUCGGACCAGCCCACUACCGGCCCACUACUGAAGUGAAACCACCCUCCGCCGCCGCCGCCGCUCGCCGUAGUCACCUCCGCCGCCACCCUCUCUUCCCAGUGCUACCUCCCCGCCCCGCCGCUUUGCCGCCUCCGGCUGAGGCGAAUUUCCAGUAUCCAAGCCAGUCGGACAUAAGUAAGGGCGGGGAGGAAGCCGUGCCUGCGAGUUUCGACCAUGGAAGGAGGCGGCGAGCGCGCGGCGGAGGCGGAGGAGUACCACUGCCACGACUUCGAGUGGGAGGACCUCCGGGCGGAGGUGGAAGCCAACCCUGCCUUCUCCUACCACCUCUCCCCAUUUCCCACGACCGUCGGCACCCCGGAGACGCCGCCGCCGCCGCCGCCCUCGGAGGCCUGGACGAGCUUCCACCGUCGCCACACAUGCGGCAAGUUUUUCAAGGAAAGAAGGUAUUUGCUAAAGGAAUUUCCAGAACUUCUUAACAGCAAGGAUAGUGCAAAGGUUUUAGAGGUGGGUUGUGGGAAUGGAAGCACUGUUGUUCCCAUUUUACGCUCUAGUCCAAGCACAACUGUAUAUGCUUGUGAUUGUAGCAAAGAAACUCUGGAGAAGGCAAAUGAGAUUGUUUGCAGCACAAAAGGAGUUGAAGUCAAGGAUAGGUUCCAUCCUUUUUUACUGGAUGCUUCGAAGGAAACUUUUCCAGAUUGGUUGUUCUGCAAAUCCUGUCGAAGUCCAUGCUCAAGUAAUUGUAAUAUGAUAGAAGAAUACCCUGCCUUUCUCAGAGACAAUCCAUGUUGUGUUGAUGGUGUGGAUUUUAUCACUAUGAUAUUCACAUUAUCAGCCAUACCUUUUGACAAUAUGCUAGCUACACUAGAGCGUUGUGUAUCUGUUCUAAAACCAGGUGGCCUUGUUUUGUUUAGGGACUACGGACUCUAUGACAUGACAAUGCUUCGGUUUUUACCUCACCAAAGAGUGGGAUUCCGGGAAUACAUGCGCUCAGAUGGCACCCUUUCAUACUUCUUCACAUUAGAUACAGUGAGAGAACUCUUUCAUGCCUCUGGACUACUAGAGAGAGCUUCUUAGGAGUGUGAAUGAAAUGGGGCAUGCCCUCCGAUCUCCAAGGGGUGGUAAGGAUACGGAGAACAAACUUCGCAAUGUCUUAGAGGUUGCAGGUCCGUUGGAUUGGACGACGUGUACCAACUGCGGAGAGUAUCACUACCACUACCUUAAUCCGUGCGUCCAAGUACCGCUCGACACUCCAUCAGGAUAGAAGAGCGUGAACAAGUUGGUGGUUUGUCAUCGUCACGCAUUCCACAGGGAAGGGGAAAGGGGAAGGCACAGGCUCCACCUAGCGGCGACGAUGAGGAGGAGGAUGAGGGCUACAUCACACCAGACGUCGAGGAGAUAGGCAUGUCGCAACUUCCCGAUGCGCCUCAUGCGUCACAGCCUACCCAAUACAACUUACGAUCCACUCGGCCAGCGAAAAAGAGAUAUACUCAGGGCUUGCAAGCUAUUCGGCGCCAACGGAAAAAGUGAUUUCUACGAAGUUGAUCUUUGUAUCAUGUGUUAACUUGUUUCACAGACUUUUGGAUUUGUUGGUUGUAUGAAGUAUGUGAUGGACUUGUAGUAUUGUUUGAUGUGUGGAAUGUGUGAUGGAGUUGUGGACUUUUUUCGUCAAUCUAGUUAGCUUGUGGACUAUGCGAUAUGUGAUUUGGUGUCAAUAUUUGCUGUGGAACCUGUUUUGUCGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
83.54%
HE_num:
HEP:
15.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.56
Avg Expression:
20.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.10940575413814 | 3.5426086548109e-06 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.13364719992103 | 4.45962805805049e-07 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.28677375681688 | 1.49360311945285e-08 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.47584141075572 | 5.4297814512473e-10 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.11407468697483 | 1.28842000182124e-07 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.15450112930267 | 1.75410444911092e-07 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.18596921773822 | 4.05238032386617e-09 |