Chr:
Chr7
Start:
9022042
End:
9028555
Strand:
+
Ref_name:
LOC4342867
Sequence
(XM_015790188.2):
AUGCUCUAAGCUAGUACUAAGCAGUGUACGGGUGAAGAUUCGUAACCAAAUUGGAGGCUUUUCACUUAGAAUUGAAAUUUUGAAUUGAGACGGUAUUCGUCAGGUCACAAUCCGAUUUUGGCCAAUCCAAAAUCCCAAACCGUGUCCCUCUCACUCCGCGCGUGCGGCUCACUGCUGGUUGUGACGGGCGGCGAUGCCGCUGCGCCAGCGCCACCCCACCCCACCCGUUCGACGAAAUGCGGCGCGCCGCUGCCCUGCUCCGCCUCCUCCGCUCCGGGGCCAGCGCCGGCGUCCGCGGCCGCCCCGCCUGCGCGGCGGUCCACCCGCUCGCCGUCAAGUCCGGGAGCGGCUCCGACGCCCGCGUGGCCACCGCGCUCGCCGACGCCUACGCCAAGUCCGGACUCGUCGACCGCGCCCGCAGGGUGUUCGACGAAACGCCGCUCCGGGACCAGGUGCUCUGGAACGUCAUGGUCUCCUGCUACUCUUCGCACGGCCUUGUGAGGGAGUGCUGGGAUGUCUUUGGCUCCAUGAGGCGGUCUGGUUUUCCCGGCGAUGGCUUCACGUUCAGUGCCUUGCUCAGUGUGCGUGCUUCUUCUUCUUCUUCGUGCUAUGACCAUGCCAACCUGUUGCUGGUCCUGGGAAGCUCGGUGCAUGGGAUUGUGAUCAGGUUGGGUCUCCACCUGGAUGUGGUGGUAGCCACUGCGCUCCUUGAUAUGUAUGCCAAAUGCGGCCAAGUUGCUGAGGCUAGCCGGGUGUUUGAUGCCAUGGUGCUGAGAAAUACCGUAUCCUGGAAUGCAAUCAUUGUUUGCUAUGGUAAGCAUGACAGAGGCAAGGAAGCCUUCGACCUUUUCGUGUCGAUGAUGAGACAUGGGUUUUGCCCUGACGAGCUUACGCUUGCCAGUCUACUUAGUUCCUGUGCCGACAUGGCGGCUGCUAAUGAGGCUACUCAGCUUCAUGCUUACACUGUUAGAAGAGGCUUGCAAGACUUUCUACAAGUGGGCAAUGCCCUUAUCAUGGCUUAUGGUAAGAAUGGUUUUGUUCAAGAAGCAAAACGAACAUUUGGUAUGAUCCAUAACCCAGAUCUAGUUACAUGGUCAUCAAUGGUUUCUUCUUUUGCAUAUCUUGGACUUGCCAAGAGUGCAAUCGACCUGUUUGACAGAAUGCUCCAACAAGGCAUACGGGCUGAUGGCAUUGCAUUUCUUGGAGUUCUUUCUGCGUGCAGUCAUGCUGGGCUCAUUGAAGAUGGCUUCAAGUACUUUCUUCUAAUGACGAGGGACUACAAAAUUGAUCCAACUCCGCAGCAUCUUGCUUGUCUAGUUGAUCUCUUAGGGAGAGCUGGUAGGAUUAGAGAUGCCUACGAAUUUUUGGUCAAUAUGUCCUGCGACGCAAAUGUUGAUGUCAUUGGAGCUUUCCUUGGUGCUUGCAGAAUGCGAGGAAACAUUGAGUCAGCAAAGUGGGCUGCCUCUAGGCUAUUUAGUCUAAAGCCAGAUGAUCCAAUCAAUUACCUGCUUAUAUCUAAUACGUAUGCUGCUGCAGGAGAUUGGAAUGAGCUUGCAAAGGUAAGAAGUGUAAUGAGGAACAUGUGUGGCAACAAGGUGCCGGGCUGUAGCUGGAUAGAGAUAGGUGGAAUUGUUCAGACAUUUGUAUCCAAUGAUAUGAUGCUCCAUCAGUCAAGAGAGAUGCAAAGAAUGAUGGAACUUCUUGUUUCAUUAGUGGAACAAGAUUGCAAUGGUGAUGACACAAUUUGCAAUGAUCCAUCAUCGAUUUUAAAAUGGCAAGAUUUUUAUCUGGCAUUUGAUUAAUUCAGCUGUUUGGGAUAAUUUCACAAUGGAAUACUGUCAGAGCUUCCUAAUGUGACUAUUCUCAGGUUUUCACUUACCAUAGACAUGAGAUAAUGUACACCCAGGAAGGAAGGAAGUCUACCGUUUCUUCUAGCUGGUAUGUGCAAAAUCGCCUGCAUUGGAAUUUGGAAUUGCUAAAAUUCCUUCAGCAUUUAUUGGUUAAUGGUGGCCAAGCAGAAUAAGGCACUUGACCGUUUCAAGUUCAGUUACCUGCUUGUGAGCCAAGAGAUCUGUGCGGCUCAAUCGUGGUUGCUUGCGCUGUGGGAAAGUUUGAUGAGCCAAACAUCCAGAUGCAAUGAGGUCAAAGUAAGAUCACCGACGGACGAAGACACCUCCAAUCAUUCGUCAUCGAUACCCAAGUAUAUAUAUAGGAUUAGGAUGCAUCUGGGAAUUCGUCAAUUGGUUUCAAUUUCUCUAAAUUCCAGUAGCACGUAGCCGAUAUGCGCAUAGCACUGGCAUUUUUUUGAAUUGGCAUAUUUGCAUUGCCAUGGAUCCAAUUAACCCAUAUCAUCUGUAGUUGUGUGUUCUCAAUUGAUUUUUUCAGCUGCAAUGUGGUAUCGAUUUUCUAAUAAUCAAACGCUACCAAAACUCCCAAACCUUUCUUUAAAUUCAUGGCGUUGCAUUGUUUUGGCACGUCGGCAUUACACUUCAUUUGUCAUGCCUAGACACAAUAAAUAAAUAAACAAGUAAAAAAUAAUGAAGUGAUGAAAGUAAAAUAGUGCAUCCAACUCUCGGUAUUUGAUUAUUACGAAUUUCAUAAUUCAGAAAUCAGAAUGAACCUAAGUACCCUGCAAGUUCGUUGGGGGUGCAAGUUCGUUGCAUAUUUACCAUACCCUAUACUUUAUGUAAGGUCCCAUUAGAGCUUUUUCAAUGUAAAUAAAUCCAAAAAGAAGUAGCAAAGUGCCAAAGUGGCGGCAUAAUUGACAAAAUUGGCCAUGACACAUCCGCAACCAAAGGCUUGUUCCAAUCAUCCUUGCAGACAUAUCCUCUAAAAAGUCAAUCAUAAACAGUCGUGUUCUAUCAUCUUCAAAAUUUUCACAUUAAA
Sequence
(XM_026026688.1):
AUGCUCUAAGCUAGUACUAAGCAGUGUACGGGUGAAGAUUCGUAACCAAAUUGGAGGCUUUUCACUUAGAAUUGAAAUUUUGAAUUGAGACGGUAUUCGUCAGGUCACAAUCCGAUUUUGGCCAAUCCAAAAUCCCAAACCGUGUCCCUCUCACUCCGCGCGUGCGGCUCACUGCUGGUUGUGACGGGCGGCGAUGCCGCUGCGCCAGCGCCACCCCACCCCACCCGUUCGACGAAAUGCGGCGCGCCGCUGCCCUGCUCCGCCUCCUCCGCUCCGGGGCCAGCGCCGGCGUCCGCGGCCGCCCCGCCUGCGCGGCGGUCCACCCGCUCGCCGUCAAGUCCGGGAGCGGCUCCGACGCCCGCGUGGCCACCGCGCUCGCCGACGCCUACGCCAAGUCCGGACUCGUCGACCGCGCCCGCAGGGUGUUCGACGAAACGCCGCUCCGGGACCAGGUGCUCUGGAACGUCAUGGUCUCCUGCUACUCUUCGCACGGCCUUGUGAGGGAGUGCUGGGAUGUCUUUGGCUCCAUGAGGCGGUCUGGUUUUCCCGGCGAUGGCUUCACGUUCAGUGCCUUGCUCAGUGUGCGUGCUUCUUCUUCUUCUUCGUGCUAUGACCAUGCCAACCUGUUGCUGGUCCUGGGAAGCUCGGUGCAUGGGAUUGUGAUCAGGUUGGGUCUCCACCUGGAUGUGGUGGUAGCCACUGCGCUCCUUGAUAUGUAUGCCAAAUGCGGCCAAGUUGCUGAGGCUAGCCGGGUGUUUGAUGCCAUGGUGCUGAGAAAUACCGUAUCCUGGAAUGCAAUCAUUGUUUGCUAUGGUAAGCAUGACAGAGGCAAGGAAGCCUUCGACCUUUUCGUGUCGAUGAUGAGACAUGGGUUUUGCCCUGACGAGCUUACGCUUGCCAGUCUACUUAGUUCCUGUGCCGACAUGGCGGCUGCUAAUGAGGCUACUCAGCUUCAUGCUUACACUGUUAGAAGAGGCUUGCAAGACUUUCUACAAGUGGGCAAUGCCCUUAUCAUGGCUUAUGGUAAGAAUGGUUUUGUUCAAGAAGCAAAACGAACAUUUGGUAUGAUCCAUAACCCAGAUCUAGUUACAUGGUCAUCAAUGGUUUCUUCUUUUGCAUAUCUUGGACUUGCCAAGAGUGCAAUCGACCUGUUUGACAGAAUGCUCCAACAAGGCAUACGGGCUGAUGGCAUUGCAUUUCUUGGAGUUCUUUCUGCGUGCAGUCAUGCUGGGCUCAUUGAAGAUGGCUUCAAGUACUUUCUUCUAAUGACGAGGGACUACAAAAUUGAUCCAACUCCGCAGCAUCUUGCUUGUCUAGUUGAUCUCUUAGGGAGAGCUGGUAGGAUUAGAGAUGCCUACGAAUUUUUGGUCAAUAUGUCCUGCGACGCAAAUGUUGAUGUCAUUGGAGCUUUCCUUGGUGCUUGCAGAAUGCGAGGAAACAUUGAGUCAGCAAAGUGGGCUGCCUCUAGGCUAUUUAGUCUAAAGCCAGAUGAUCCAAUCAAUUACCUGCUUAUAUCUAAUACGUAUGCUGCUGCAGGAGAUUGGAAUGAGCUUGCAAAGGUAAGAAGUGUAAUGAGGAACAUGUGUGGCAACAAGGUGCCGGGCUGUAGCUGGAUAGAGAUAGGUGGAAUUGUUCAGACAUUUGUAUCCAAUGAUAUGAUGCUCCAUCAGUCAAGAGAGAUGCAAAGAAUGAUGGAACUUCUUGUUUCAUUAGUGGAACAAGAUUGCAAUGGUGAUGACACAAUUUGCAAUGAUCCAUCAUCGAUUUUAAAAUGGCAAGAUUUUUAUCUGGCAUUUGAUUAAUUCAGCUGUUUGGGAUAAUUUCACAAUGGAAUACUGUCAGAGCUUCCUAAUGUGACUAUUCUCAGGUUUUCACUUACCAUAGACAUGAGAUAAUGUACACCCAGGAAGGAAGGAAGUCUACCGUUUCUUCUAGCUGGUAUGUGCAAAAUCGCCUGCAUUGGAAUUUGGAAUUGCUAAAAUUCCUUCAGCAUUUAUUGGUUAAUGGUGGCCAAGCAGAAUAAGGUAAACCUACUAUAAGCAGUUCAGCAGCAAAUACCAAUCCCAAAGCUCAUAGCUUAAGCUAUGAUCACCCAGUACUUCACCUCUUUAGAUAGUUUUCAUUAAAUAUCCUGAUACUCCGAAGUAGAGUGUGAAAGAGAAGGAAAAAAAAUGAAUUUCUACCAAGAAGUACAAAGCAUCUUGCCAUUGAUCUAGUCCAUUCAUACCUUGGUCACGGUAUCACUCCUUUCUCACAUUGCCCACAUUGCUCUAUUCAUACAUUUGGAAUAAGGGAAUUCUUACCAUUUCCGAUGGGAAUUGAACUGAUUCUUGUGCAUUUAAAAGGAACCCUACAUGAUUAUAUUAUAUUUUUCAACCAUUCAAUGUUGCUGAAGACAAACCGAUUUAAGAAUUAUCUAAAACAUUCCAAACUGCUACAAUCAUAGGAAUAAGACACAUUUAGGAAAUUUGACUACCUCUCUUUCAAUCAUGCACAACAGCCCAAUCUGAUGCUAUGGAGACAGGGACUUUCUGAUGCAAGUCUGGUCUGUAUACAUUUAGGCACUUGACCGUUUCAAGUUCAGUUACCUGCUUGUGAGCCAAGAGAUCUGUGCGGCUCAAUCGUGGUUGCUUGCGCUGUGGGAAAGUUUGAUGAGCCAAACAUCCAGAUGCAAUGAGGUCAAAGUAAGAUCACCGACGGACGAAGACACCUCCAAUCAUUCGUCAUCGAUACCCAAGUAUAUAUAUAGGAUUAGGAUGCAUCUGGGAAUUCGUCAAUUGGUUUCAAUUUCUCUAAAUUCCAGUAGCACGUAGCCGAUAUGCGCAUAGCACUGGCAUUUUUUUGAAUUGGCAUAUUUGCAUUGCCAUGGAUCCAAUUAACCCAUAUCAUCUGUAGUUGUGUGUUCUCAAUUGAUUUUUUCAGCUGCAAUGUGGUAUCGAUUUUCUAAUAAUCAAACGCUACCAAAACUCCCAAACCUUUCUUUAAAUUCAUGGCGUUGCAUUGUUUUGGCACGUCGGCAUUACACUUCAUUUGUCAUGCCUAGACACAAUAAAUAAAUAAACAAGUAAAAAAUAAUGAAGUGAUGAAAGUAAAAUAGUGCAUCCAACUCUCGGUAUUUGAUUAUUACGAAUUUCAUAAUUCAGAAAUCAGAAUGAACCUAAGUACCCUGCAAGUUCGUUGGGGGUGCAAGUUCGUUGCAUAUUUACCAUACCCUAUACUUUAUGUAAGGUCCCAUUAGAGCUUUUUCAAUGUAAAUAAAUCCAAAAAGAAGUAGCAAAGUGCCAAAGUGGCGGCAUAAUUGACAAAAUUGGCCAUGACACAUCCGCAACCAAAGGCUUGUUCCAAUCAUCCUUGCAGACAUAUCCUCUAAAAAGUCAAUCAUAAACAGUCGUGUUCUAUCAUCUUCAAAAUUUUCACAUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.99%
ME_num:
MEP:
37.8%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.67
Avg Expression:
2.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.24181535297005 | 6.61227105046562e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.09328109202612 | 4.7552645812564e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.28208802830204 | 0.0215369287585821 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.0245264687234 | 7.04459084415288e-05 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.07108489477683 | 0.00613296434633487 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.23887771142545 | 0.000944746199376604 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.05550051028423 | 0.00376199557492471 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 6.17228057713296 | 1.17311717852973e-14 |