Chr:
Chr7
Start:
3167974
End:
3170340
Strand:
+
Ref_name:
LOC4342443
Sequence
(XR_001547354.2):
CCCUCUUCUCUAGGCCCGGGAAUAAAUCAUCUCCUGAGGCGGCGUGGAAGUUUUCCUCGAGGAGGCGGCGGUGCAGCGAAGACGCGACGGCGGGGGCGGCGCGACCCGGAGGCGAUGGCGACGGCACGGCGCUCUCCUCCGGCCGCCAUAUUAUCUCCGAUUGCACGUGCACCUCCUCCUUCCUGGGACCUUGUACCCUCUCCUUCCUAGGAUAGUGCUGUGCUUCAGGAAGAUGGCAAAGAAGAAGAACCCAAUUGUCUUUAUGGAUAUUUCGAUAGGUGAUGAACCUGAGGCCAUUCCCAACCCAAUGACUAGGAUGGUGUCUAUAGCAUUAAAUAAGCUGCCACCUAGGAUGAAAAAUGAUGUGGCAAGUGAAUAAAUGAGGAAAUAGAAGGAAACCAUGUCUUGCAUGAGACAUGGUUUCUACACAACAUCCAAGACAUCAUGCUCCUUGAAAUUGACUGGUAGGAUGUUCCAUAGAAUUUUUUUGAUGGUAGCAGUUUUCUGAUGGUGUCAUUUAGACUAAUUAACCAUCCAAUGAAUGGUCUACUGAUGUGUCAUUUUGGGGAUGUUGGGAGAAGUUUGGAUUUUGAUGUGCAUUUGGACUAAUUAAUCAUCCAAGUUGUCGGCAGAUGGAUUCAACUUGCUGAGUGUAAGGGAAUGGAAUCAGAACAAUCUUCUUAUUAUACUGUAUAAAUAUCUCCUGUACUUUUGGCUGGCACUGCAUUGGCAUCAACUUUCUUGAUCAGGAAGUUGUAACAAGCAUGUAUAUGUUUUCUAAUUUUCUCUUAAAUGGACCGAUGGUAUUUUUGAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.72%
ME_num:
MEP:
15.45%
HE_num:
HEP:
64.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.65
Avg Expression:
86.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.5026597466414 | 1.0167473653965e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.15242365176562 | 3.55539611901517e-24 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.09080357608006 | 3.2386325020366e-17 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -10.8161201311596 | 2.44509561437033e-15 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.16161755254561 | 3.9775793385595e-26 |