Chr:
Chr7
Start:
1711869
End:
1714581
Strand:
+
Ref_name:
LOC4342338
Sequence
(XM_015789441.2):
UUUUGACCUCAAAUUAAUCAUCUGAACAGCAUGAAGGCCCGUUGCAGGAAUAAUCCUAUUUAUUCUCUCACCUACUCACCCACCCAGGCCACACGCCGUAAACACUGAAACACACCAAUUCUUCAGAGUUUUUUCGCUCUGAACUUUCUUCAGCAAACAGGCCUGCAUAAGAUAGCUAGCUAGCUACUACUACAUAUACACUAUAUGGUUUUUGGCUGAUCGAUUUGCUAUCAUCCUAACUGGGGUUACAUUACAUAAACAUGGACAGCUUUUGUCUAAUGUUUUCCAGUAGAUUGGUCUCUAGUGUUCUCUUCAUGAUGAUUCCUCUUACCAUGGCGGUCGACAAAUUGGUGUUCAACGGAUUCAGCAACAGCAGUUUGGUGCUUGAUGGUUCAGCUGCCGUCUUACCAAAUGGAAUCCUCAAGCUGGCCAAUGGAUCAUCAUAUGCAUACACAAAAGGCCAUGCUUUCUUCCCUUCUCCCAUCCAAUCGCGCAACUCCACAGAUGGCUCCAUCUUCUCCUUCUCGGCAACCUUUAUCUUCGCUAUGCUUCACACGCUUCCUUUGGAGGAGGGCGAUGGGAUUGCCUUCUUCCUAGCUGCACACACCAACUUCACCGGAACAGGUAUUUCUGGCGACUUUGGUCUUCCUGCUGAAGAUGACAAUGGCAAAUCGUUGGACCAUAUCCUGUCCAUAGAGCUAGAUACCUUACACAAUGAAAGAUUUGGGGACAUCGAUGACAACCAUGUUGGCAUCAACAUCAACAGCUUGAACUCCUCCCAGUCCUCUCCAGCCGGCUACUACACAGAUGAACCCUACUCUAUUUUGCACCCGCUGCGGCUCAAGAGUGGUGAGGAGAUGCAAGUAUGGAUAGAUUACGACCACCGGCGCAUGCAGCUCAAUGUCACCUUAGCUCCAGUCCCCAUGGCCAAGCCCAAGCGCCCUCUCUUAUCUGCAACUCAUAAUCUCUCAAAACUGUUGUUGGACCACAUGUAUGUUGGCUUCUCUUCAUCGUCGUCAGCGGCCUUGUAUAUUAGUGGUCAUGCUCAUGGUCAUUUUAUUGCCGGCUUCUGCUUCAGGCUAGAUGGAAAACCUGCAUCACUGCAAUACUCCAAGCUACCCAAGAUAAACACAUCUGAUCUACCUGAUCAUGUCACCUAUGGUACUGGAAGGGGGAGCUCGAUUUAUUGGCCAGAUUUUUUGACACUUCCAUUGAUAUAUGCCUCAGCUCUUGGUGGUGCAAUAUCGAUGCCUGUUAUCCUCUACCUAAUUGUGAGAAGAUGUCGCAGGUACCAGGAGUUACAUGAAGAUUGGGAGGUCGAGUUUGGCCCGCAUAGGUUCUCAUUCAAGGAGUUGUUCAAAGCUACCAAUGGCUUUGUUGACAAGCAGUUGCUCGGAGUAGGAGGGUUCGGGAAGGUGUACAAAGGAGUGCUUCCAUCAUCCAAAUUGGAGGUUGGUGUCAAGGUGAUGUCCCAUGAUUCAAAACAAGGGAUGAAGGAGUUCGUCGCGGAGGUUGUAAGCAUGGGCCGACUUCGACAUCGGAACCUAGUACAGUUACUUGGAUAUUGCCGUCGCAAGGGUGAACUUCUACUAGUAUAUGAGUACAUGCCAAAUGGCAGUCUUGAUAAGUACUUGUAUGACCAGGAUAAACCCUCGCCGAAUUGGAUUCAAAGGUUUGAGAUCAUCAAGGGUGUUGCAUCAGGUCUUCUCUACCUACACGAAGAAUGGGAGCAGGUCGUCAUCCACCGUGAUAUCAAGGCAAGCAACGUCCUCCUCGACAGUGAGAUGAAUGGUCGACUAGGCGAUUUUGGCCUAGCACGAUUACACGACCAUGGAGUUGAUGCACACACGACAUGUGUGGCAGGGACCAGAGGCUACAUCUCCCCUGAACUAGCGAGGCUGGGCAAGGCGACCAAGGCAACCGACGUGUUCGCGUUCGGUGCAUUCAUCCUCGAGGUCGCCUGUGGCCGUCGCCCGAUAGGCAUGAACUCAUCAGGAGAAUUGCAAGUGUUGGUGGACUUCGUGCUCAGAUUCUGGCAGCGAGAUCUGAUCCUGUGCAUGUUGGAUACCAGGUUGGGAGGAGAGUUUGUGACGGAGGAGGCAGAGCUAGUGCUCAAGCUUGGGCUUCUCUGCUCGCACCCGUCGCCAGCUUCAAGGCCAAGCAUGAGGCUUGUGAUGCAAUAUUUGUGCGGCGAUGUGCUGUUACCGGCGAUGCCGGAGAGUUACCGGAGCAUCCGGAGUUUCAGUGAGAUGCAGGUUGAAGGUGAUCAGCUUGAUGAGAAUCCCUUAUUAAGACAGUAUCUGUCGGUGCAAACGAGUAUAACCGGUCUCUCUGGUGGGAGAUGAUACUGUCAAGUGUCAACAACUAGAGUUUAAUUAGCCGAUACCAAGGAGAAGAGAAAUCUUGAUAUGGAUUAAAUUAAGAAGAGAUUUAGGUAAUUUGAGCCAGAGCAGACCCGAACAGAGGUUUUUAGUUCAGUGAACACACGGGAAGAUCGGCCUCGAUAUAUAUAUUUUGUGAUUUUAUUAUUUUGCGGUUUCAUUUAGACUUAAAGAUACGCUUUAUUUGUGCGUGUAACUACUUUUAUACCGAGCAGGACACAAUAUGCUAGCCAGUCCGAAUUCCAUCGAAACAGGAAUGGAAGCUACGGCUGUGUUUAGUUCCACGUCAAAAUUGGAAGUUUGAAGAAAUUGGAAUGAUGUGACGGAAAAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.58%
ME_num:
MEP:
48.58%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.80
Avg Expression:
5.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.77160026983012 | 6.47853558736833e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.88328835992984 | 3.54934141064505e-05 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.73360207756419 | 0.000282433708697255 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.12534294750503 | 2.56839138780475e-23 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 4.08511729677584 | 2.0737452980477e-07 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 5.63280241042115 | 5.15304139059451e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.75418720199561 | 1.18985866653851e-22 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 6.87971278385878 | 1.18966217828825e-54 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 7.52382872366753 | 1.55466002965642e-73 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.7079794763287 | 9.66181540990885e-09 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.7150808069201 | 2.74758620914932e-15 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.71642577656943 | 2.06030860083436e-26 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | 5.14354663612779 | 0.000359929386141904 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 4.74250306069568 | 5.81456806231089e-29 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.46774868019607 | 4.0187192903244e-12 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.26826146260784 | 4.75086353294868e-07 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.00024600540009 | 1.63602275915834e-19 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.39367858857705 | 0.0363155087737719 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.89374058483423 | 2.49186358036761e-19 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.00005029994037 | 1.67804258769756e-19 |
| 21 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.48771422474721 | 1.30782602077688e-50 |
| 22 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.08676108834211 | 1.18213532637152e-14 |
| 23 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.39143238816756 | 0.0217346574246751 |
| 24 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.87772600935215 | 0.00627431614284979 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.51544888951365 | 0.000319542519357291 |
| 26 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.78268542258903 | 5.71313781148846e-22 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.19147132743459 | 0.0375672899320726 |