Chr:
Chr6
Start:
30779443
End:
30784207
Strand:
+
Ref_name:
LOC4342102
Sequence
(XM_015788312.2):
CUGGGAGGCCAUGACGGAGUUGGCGAAGAGCUUGGGCGGGAGGCAGCCGACCUCGCGCUCCCACAGCCCCGCCAUCCGCGUCCCCUCCCGCGGCAUCGCCUCGCCUUCUUCUUCCUUCUUCCUCCUCCGCCGCGAGGCCUUCUUCCUCCUCCCUCUCCUCUUCCCUUCUUCGCAUGUCGGCCAAGGGGGAGGUGGAAGGCGGUGGCACAUCUGGGCCGUCCAAUGUCCCAACCUCAACGGCCCAUAUUCCGUGUGGAUCUGGUGGGCCUGGGCCUCACGCGUUCACGGCCCAACUAUUCUCCCCAUCGCGGGCGGCGUGUACAAAAACCCAAAGAGAAAGCAUCAGCGGAGCAGGUUGGAAGCGGAGACCGAGAGAGAGAAGCAGCACCCAAACCCUAGCCCUCCCCUCUCCUCCCGCACGCGCGCGUCGGCGCCACCACCGGGAGCUCCGCCGCCGCCGCCGCCUCAUCCGCCCCGUGCCAUGGCGGAGACCCCCGAGCGCAGGAGGUACUCAGGGUCCCCCUCUCCUUACAGGGGAAACCCAAAAUCAAGGUCAAGAUCACGAUCACCUGCUGCUCGAUCCCAGUCUAGGUCUCCAGUCCCUGACCCUAGAUCUCAGGCAAGGUCAAGAUCAAGAAGCCGCGAGAGGGAGCCUGAUGCUGUAAAUCAUGGAAAUACACUGUAUGUGACUGGACUCUCUUCUCGAGUGACUGAAAGAGAACUUAAAGAUUACUUCUCUAAAGAAGGAAGGGUGACUAGUUGCCAUGUUGUCCUUGAACCCCAUACACGUGUUUCUCGUGGAUUUGCUUUUGUCACCAUGGACACUGUUGAAGAUGCUGAACGCUGUAUCAAGUAUCUUAACCAGUCUGUAAUGGAAGGCCGGAACAUCACAGUUGAAAAGUCACGUCGAGGUCGCCCAAGGACGCCAACUCCUGGAAGCUAUCUUGGUCAUCGAUAUGACCGUAGAGAGCCACGUGGGAGAUACCGCAGCAGAGGAGGUGGCUAUGGCCGUGAUGAGUACUACGGCAAUAGCUACCGCAGGUCUCCGCCUCCAAUGUACCCAUCCUACAGGGACACAAGGGACUACCCUCCAUACAGGGACACAAGGGACUACUCCCCCCACAGGGAUGCUCGAGAUUACUACGACGGAAGGGGAGGCAGGGGAUACUCCCCACAUAGAUCUCCUCCUUAUGGCGGUGGCAGGGCCCGGAGGGAGCGAUCUAGAUCAUUGCCGUAUUCUCCCUACCGGAUGCCUGAGAGAGGCUAUGGACGCCAAGCCGGUGGUGGUGGCUAUGACAGGUAAGGUUGCUCCCUUGGCUCUUGUUGCAUUAGAUACCUGAAUUCCAAGCUGGAAAACGUGCUGUUCCUGUUAGCCCUGAUGAAUGUUAGAUUGCUGUAGCUUUGUACUAUUUGAAAGAUGCAUUCCUGGAUUUAAUGAACGUUGUUGUAUGGGGUACCUAUAGACGGGGGUGUUUAGAUGGGGCUAAAACUUUUUAACCCAUGUCACAUCGGAUGUUUGGACGCUAAUUUAGAGUAUUAAACAUGGACUAAUAAAAAAACUAAUUUCAUAAAUGAGAGCUAAUCCGCGAGACGAAUUUUUUAAGCCUAAUUAAUCCAUAAUUAUCAAAAGUUUACUGUAGCAUCACAUUGUCAAAAUCAUGGCGUAAUUAGACUCAAAAGAUUCGUCUCGCGAAUUAGUCCAAGCUUAUGAAAUGGGUUAUGUAAUUAGUGUAUGUUUAAUACUCCAAAUUAGUGUCCAAACAUCCGAUGUGACAGGGACUUAGAAUAAGUCUCUGGAAACCAAACAGCCCCUAGUCUGUAAUCUGGAAUGAUUUUAAGUACGACUGGUAUGUCUUAUUUUGGCACCUUUA
Sequence
(XR_001546947.2):
CUGGGAGGCCAUGACGGAGUUGGCGAAGAGCUUGGGCGGGAGGCAGCCGACCUCGCGCUCCCACAGCCCCGCCAUCCGCGUCCCCUCCCGCGGCAUCGCCUCGCCUUCUUCUUCCUUCUUCCUCCUCCGCCGCGAGGCCUUCUUCCUCCUCCCUCUCCUCUUCCCUUCUUCGCAUGUCGGCCAAGGGGGAGGUGGAAGGCGGUGGCACAUCUGGGCCGUCCAAUGUCCCAACCUCAACGGCCCAUAUUCCGUGUGGAUCUGGUGGGCCUGGGCCUCACGCGUUCACGGCCCAACUAUUCUCCCCAUCGCGGGCGGCGUGUACAAAAACCCAAAGAGAAAGCAUCAGCGGAGCAGGUUGGAAGCGGAGACCGAGAGAGAGAAGCAGCACCCAAACCCUAGCCCUCCCCUCUCCUCCCGCACGCGCGCGUCGGCGCCACCACCGGGAGCUCCGCCGCCGCCGCCGCCUCAUCCGCCCCGUGCCAUGGCGGAGACCCCCGAGCGCAGGAGGUACUCAGGGUCCCCCUCUCCUUACAGGGGAAACCCAAAAUCAAGGUCAAGAUCACGAUCACCUGCUGCUCGAUCCCAGUCUAGGUCUCCAGUCCCUGACCCUAGAUCUCAGGCAAGGUCAAGAUCAAGAAGCCGCGAGAGGGAGCCUGAUGCUGUAAAUCAUGGAAAUACACUGUAUGUGACUGGACUCUCUUCUCGAGUGACUGAAAGAGAACUUAAAGAUUACUUCUCUAAAGAAGGAAGGGUGACUAGUUGCCAUGUUGUCCUUGAACCCCAUACACGUGUUUCUCGUGGAUUUGCUUUUGUCACCAUGGACACUGUUGAAGAUGCUGAACGCUGUAUCAAGUAUCUUAACCAGUCUGUAAUGGAAGGCCGGAACAUCACAGUUGAAAAGAAGAGAUUGUGCAAGCUAUGUGCAACAAUCAAGAUGCUGAGUUCAUCAAUUUCAACUUUAGCUCAUACAGCUUGAUCAAUGGACAGCCCAAAGGGUUACUAUGCACCACAAGAUUCACAACUAAACAUAGCAAAUUUUCAACUAAACCCCUGAGCAUUCAUCUUCAACUUCCAACAUCAACUAAUCAACGGGCAUUCACAACUCGUUAGACAAGCAUGUGUGGUGACGUACGCAUAGCAAAUAUUGGAUCCCUGCUAGUUGGAGUUUGCGCUCUUCAUUACAUAUUUCCUCCAUUGGUCCGUAAUUGCGGCAUAUGUUGAUUGAUCGUAAGAGGAACUUUCACGUCGAGGUCGCCCAAGGACGCCAACUCCUGGAAGCUAUCUUGGUCAUCGAUAUGACCGUAGAGAGCCACGUGGGAGAUACCGCAGCAGAGGAGGUGGCUAUGGCCGUGAUGAGUACUACGGCAAUAGCUACCGCAGGUCUCCGCCUCCAAUGUACCCAUCCUACAGGGACACAAGGGACUACCCUCCAUACAGGGACACAAGGGACUACUCCCCCCACAGGGAUGCUCGAGAUUACUACGACGGAAGGGGAGGCAGGGGAUACUCCCCACAUAGAUCUCCUCCUUAUGGCGGUGGCAGGGCCCGGAGGGAGCGAUCUAGAUCAUUGCCGUAUUCUCCCUACCGGAUGCCUGAGAGAGGCUAUGGACGCCAAGCCGGUGGUGGUGGCUAUGACAGGUAAGGUUGCUCCCUUGGCUCUUGUUGCAUUAGAUACCUGAAUUCCAAGCUGGAAAACGUGCUGUUCCUGUUAGCCCUGAUGAAUGUUAGAUUGCUGUAGCUUUGUACUAUUUGAAAGAUGCAUUCCUGGAUUUAAUGAACGUUGUUGUAUGGGGUACCUAUAGACGGGGGUGUUUAGAUGGGGCUAAAACUUUUUAACCCAUGUCACAUCGGAUGUUUGGACGCUAAUUUAGAGUAUUAAACAUGGACUAAUAAAAAAACUAAUUUCAUAAAUGAGAGCUAAUCCGCGAGACGAAUUUUUUAAGCCUAAUUAAUCCAUAAUUAUCAAAAGUUUACUGUAGCAUCACAUUGUCAAAAUCAUGGCGUAAUUAGACUCAAAAGAUUCGUCUCGCGAAUUAGUCCAAGCUUAUGAAAUGGGUUAUGUAAUUAGUGUAUGUUUAAUACUCCAAAUUAGUGUCCAAACAUCCGAUGUGACAGGGACUUAGAAUAAGUCUCUGGAAACCAAACAGCCCCUAGUCUGUAAUCUGGAAUGAUUUUAAGUACGACUGGUAUGUCUUAUUUUGGCACCUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
5.89%
HE_num:
HEP:
93.9%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.46
Avg Expression:
73.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.04971800792627 | 2.07671737704413e-41 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.10621471456227 | 1.09033065362747e-18 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.07604443697909 | 1.0011059513492e-27 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.05299537067825 | 3.49215282189346e-29 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.10333927967243 | 6.06504358035677e-49 |