Chr:
Chr6
Start:
19604045
End:
19606240
Strand:
-
Ref_name:
LOC4341194
Sequence
(XM_015786674.2):
UUGGCGUAUAUACCACCCUUGUGCUUGGCGGUUUGUUUCAUCCCAUCAAUUGUUUGGAUUCAACAGUAGUCAGUCUCACUCUCUUCCUCCAAAUCGUUGGUGCUGCUGCUACUGUGUAUCGGAGAUGAACGGCGUUGGUGGGGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGGAGGCUAGCGGACGAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCGGUUCCACCGCCAUGAGCCUAGUAGCAACCAGUGCACCUCGUUCGCCGCCAAGCAUAUCAAGGCGCCCCUCCACACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAACUGUGUAAUGCGAGAAAACAUUAUUGCGACCGGAUGUAUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAAUGAACACAUCCUCAAAGUCAAUUUUAUUGGGGGAGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUGACCGUCCACUCUGAGGUCAUCGAUGGCCAGCUUGGAACACUGGUGGUCGAAUCAUUUAUUGUGGACGUUCCAGAAGGGAACACCAAAGAUGACAUAAGCUAUUUCAUCGAGAACGUUCUCAGGUGUAACCUUAGGACCCUUGCUGAUGUGUCAGAGGAGCGCCUUGCCAAUCCUUGAUCGCACCCUGCUUUCUUAGUUGAUUAAUGAUUAGAAUAAUCCAUAUAUAAAAUUGGUGGACCGUAUUGAAACUCUUAGAAAACAACAUAGCUUCUUGGUCGACACUGGAUACUAAAGCUUCUUUUUUAGAAUUUAGAGCAAUCAAGACACUCACUUCAGUUUACUACAGACAUAUGUGCAACUUUGUUGUUUACUUCACUCGUGCAAAAAAUGUUGAACUGAAAUGAAACAUUGAUACUCUAAAGGAUUGUAUUCAGAUUUCCUAUUCAUUAAUUCAUAUGUCUUCUUCUUAGCUAUGAAAAUAAUGUUCCCAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.26%
ME_num:
MEP:
7.32%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
1.00
Avg Expression:
79.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.77906828278731 | 0.000112014598607417 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.75637748687543 | 0.000624699652331489 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.03277783119789 | 0.00108774979270175 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.1624125532013 | 6.28633880398021e-05 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 4.17973321251684 | 0.0466021666358601 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.5561676552336 | 1.0450727541331e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.36196781002284 | 0.0229422876121089 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.01738935081784 | 0.00113090884873568 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.03247759540293 | 0.00012671868596686 |