OSA-PHAS4341193


Function Link


Basic Info

Chr:

Chr6

Start:

19580055

End:

19585422

Strand:

-

Ref_name:

LOC4341193

Sequence
(XM_015786368.2):

UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGGAAAGAAGAUUGGAUCAAAGCGAGGUCGGAAGCGGAAAUCGAGUUUGGAAACAGAGCAGGAAUCGGCCGGAGUCCAGAUCGGCUAUGGUUAGGAUCGGCUAGGUCUGAGUUGGGCUAAGUAAGUCGAUACAGCCGAUUCCGACAAUAUGACUUGUACACGACAUCGGGUUCAAGUUAAUGUACUUCAAGAUGAUUGCCAUGCACGGAUAGAGUCCUGGGAAGGCAAUUGUAUCUAUUAAUUAGGAUAU

Sequence
(XM_015786369.2):

UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGGAGAAUGCCUUUGUGUAUGCACUACCUGGCAGAUUGUGCAAGAGCUAUUGUUCCCCAUUUGGCCUAUCAAGUGGUUGUAUUUGCCUAAUGUUGUUAACCAAAUGAACAUAUCCUUAUCAUGUUUUCGUGUUA

Sequence
(XM_015786372.2):

UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGGACCUUACGUAUGCUGGUCUGAUUUGAGUUGGCCUUCUACAUCUAGAACUUGCUCAAAAUGUGUGACCUUACGUAUCUUGAACUCAUUGAACUCAUUAAGUAUGUAUCACACUCAAUUGUAAGCACCGAUCCUUUUCUUUUUAUUAUUUCUACUCCUUUUCUUGUCCAGUUGUGCAUGACAAAAAUGUGAAUGGUCAAGUAUUAAGUUUGCUCA

Sequence
(XM_015786373.2):

UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGGUUUGGCUGCAAGAAUUGAUUUGUCGAUUCAACAUCAUCUUCUACUAGUUGUUUAUUAGUUUGAAUGUCCUCCAUGAAAAUACAGGACCUUACGUAUGCUGGUCUGAUUUGAGUUGGCCUUCUACAUCUAGAACUUGCUCAAAAUGUGUGACCUUACGUAUCUUGAACUCAUUGAACUCAUUAAGUAUGUAUCACACUCAAUUGUAAGCACCGAUCCUUUUCUUUUUAUUAUUUCUACUCCUUUUCUUGUCCAGUUGUGCAUGACAAAAAUGUGAAUGGUCAAGUAUUAAGUUUGCUCA

Sequence
(XR_001546516.2):

UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGUGCAUUCUAGAGCCCUUCCCACUUUAUACAAGGUGAAGACUGGAGAGGGUCGGAGCGUAUUAAGGAAAAAAAUGUAAGAGACUCCUAUUGUUCCAUGUCUCACGGCAUGAACAAUAUAGUUGGCACUAAAAAAAAGUACAAGCAUGUGCUAGAUUUGCAUAUAUGAUGCAAUCUUUGCAACCCUUAAAAAUAAAAUAACUACUUCUAAGUUUGCUUUUUACCAUGUUAGAGGCAAAAAAAAAAAUCAGGGGAACUAAUUUCUACCAAACAAACAAAAUAUACGGUAGCAUCUCAGGAAAAAAUAUCAAGAUGAUUACGAUAAACAACCUAGGAUGGCAUGAGAUAGCCAACAGUUUGGUCAAAUAUAUGUUACUUUAGAUAACAAAAGCGUACAAGACACAUUUGGUUAAUUACAUGCCUUGCACGCUUGAAUCGACCCAACCGGCUAGGUUUCUUCCUCCACCGCCUCAGUUAAGUACAUCACCAUGAUUAAGCUCAUGACCUUGUAGUGUCUAUCGUCGAGGCUUCAAGACAAACCAAGCACACAGUUACCUUCACACAAUCACGAAGCAGUUCAUCAAAAGAGCUAUGUUGUUGCUCAAAUAUAUACCACCCUUGUGCUUGCUUGCCUUUUCCAUUCUACCACAAUCGAUCAGCUUCAUGAGCUAGCAUCUGACCUCUUCCCCUUCACCUUGUUGGUGUUGUUGUGUUUCUACUGCCUACCGGAAAUGAAUGUUGGCACAAGUGGUGCGGUAGGAGAAGCGGCAGGGAGGCUGCCGACAGGCGCAGUGAAGACUUACGGAUGAGCGUUGUGAGAUCAGGCAGGACGAGGUGGAGUACGUGCAGCACUUCCGUAGCCACGAGCCCGGUAGCAACCAGUGAAAAUCCUUUGUCACCAAGCACGACAGAGUGCCCACCAAACUGAAAGAAGAUUGGAUCAAAGCGAGGUCGGAAGCGGAAAUCGAGUUUGGAAACAGAGCAGGAAUCGGCCGGAGUCCAGAUCGGCUAUGGUUAGGAUCGGCUAGGUCUGAGUUGGGCUAAGUAAGUCGAUACAGCCGAUUCCGACAAUAUGACUUGUACACGACAUCGGGUUCAAGUUAAUGUACUUCAAGAUGAUUGCCAUGCACGGAUAGAGUCCUGGGAAGGCAAUUGUAUCUAUUAAUUAGGAUAU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

449

LEP:

91.26%

ME_num:

36

MEP:

7.32%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosprem

Tau :

1.00

Avg Expression:

142.52


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN2.062072460721987.50367389650718e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-6.951434531000383.70698643401774e-06
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-5.935795519091270.000425974766494013
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-6.19585358561595.91177263590914e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-6.365366171822383.24677839991013e-05
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA2.188956243452011.13542900544855e-06
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA2.063152883764971.04333668188811e-05
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-6.766894719888415.25174003815492e-06
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-2.315787459058520.0228018616426629
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-3.962024974136515.32520088413714e-05
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN2.139410156868351.06733089358091e-05