Chr:
Chr6
Start:
19580055
End:
19585422
Strand:
-
Ref_name:
LOC4341193
Sequence
(XM_015786368.2):
UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGGAAAGAAGAUUGGAUCAAAGCGAGGUCGGAAGCGGAAAUCGAGUUUGGAAACAGAGCAGGAAUCGGCCGGAGUCCAGAUCGGCUAUGGUUAGGAUCGGCUAGGUCUGAGUUGGGCUAAGUAAGUCGAUACAGCCGAUUCCGACAAUAUGACUUGUACACGACAUCGGGUUCAAGUUAAUGUACUUCAAGAUGAUUGCCAUGCACGGAUAGAGUCCUGGGAAGGCAAUUGUAUCUAUUAAUUAGGAUAU
Sequence
(XM_015786369.2):
UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGGAGAAUGCCUUUGUGUAUGCACUACCUGGCAGAUUGUGCAAGAGCUAUUGUUCCCCAUUUGGCCUAUCAAGUGGUUGUAUUUGCCUAAUGUUGUUAACCAAAUGAACAUAUCCUUAUCAUGUUUUCGUGUUA
Sequence
(XM_015786372.2):
UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGGACCUUACGUAUGCUGGUCUGAUUUGAGUUGGCCUUCUACAUCUAGAACUUGCUCAAAAUGUGUGACCUUACGUAUCUUGAACUCAUUGAACUCAUUAAGUAUGUAUCACACUCAAUUGUAAGCACCGAUCCUUUUCUUUUUAUUAUUUCUACUCCUUUUCUUGUCCAGUUGUGCAUGACAAAAAUGUGAAUGGUCAAGUAUUAAGUUUGCUCA
Sequence
(XM_015786373.2):
UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGGUUUGGCUGCAAGAAUUGAUUUGUCGAUUCAACAUCAUCUUCUACUAGUUGUUUAUUAGUUUGAAUGUCCUCCAUGAAAAUACAGGACCUUACGUAUGCUGGUCUGAUUUGAGUUGGCCUUCUACAUCUAGAACUUGCUCAAAAUGUGUGACCUUACGUAUCUUGAACUCAUUGAACUCAUUAAGUAUGUAUCACACUCAAUUGUAAGCACCGAUCCUUUUCUUUUUAUUAUUUCUACUCCUUUUCUUGUCCAGUUGUGCAUGACAAAAAUGUGAAUGGUCAAGUAUUAAGUUUGCUCA
Sequence
(XR_001546516.2):
UGGCGGUUUAUUCCAUCCCAUCAAUUGUUCGGAUUCAAGAGUAGUCAGCCUCACUCUCUUCCUCCAAAUCAUUGGUGCUGCUGCUACUGUGUACCGGAGAUGAACGGCGCUGGUGGUGCGGGAGGAGCAGCGGCAGGGAAGUUGCCAAUGGUGAGCCACCGACGGGUGCAGUGCAGACUAGCGGACAAGCGGUGUGAGCUCCGGGAGGAAGAGAUGGAGUAUAUCCGGCAGUUCCACCGCCACGAGCCCAGCAGCAACCAGUGCACCUCGUUCGUCGCCAAGCAUAUCAAGGCGCCCCUCCAAACCGUUUGGUCACUAGUGAGGAGGUUUGAUCAGCCACAACUUUUCAAACCUUUUGUGAGAAAGUGCGUAAUGCGAGAAAACAUUAUUGUGACCGGAUGUGUUAGGGAGGUCAAUGUUCAAAGCGGGCUUCCAGCCACAAGGAGCACUGAGAGGUUAGAGUUGCUUGAUGAUAACGAACAUAUCCUCAAAGUCAAGUUUAUUGGGGGCGAUCAUAUGUUGAAGAAUUACUCAUCCAUCCUAACCAUCCACUCUGAGGUCAUCGAUGGCCAACUUGGAACAUUGGUGGUCGAAUCAUUUGUAGUGGAUAUUCCAGAUGGGAACACCAAAGACGACAUAUGCUAUUUCAUCGAGAACGUUCUCAGUGCAUUCUAGAGCCCUUCCCACUUUAUACAAGGUGAAGACUGGAGAGGGUCGGAGCGUAUUAAGGAAAAAAAUGUAAGAGACUCCUAUUGUUCCAUGUCUCACGGCAUGAACAAUAUAGUUGGCACUAAAAAAAAGUACAAGCAUGUGCUAGAUUUGCAUAUAUGAUGCAAUCUUUGCAACCCUUAAAAAUAAAAUAACUACUUCUAAGUUUGCUUUUUACCAUGUUAGAGGCAAAAAAAAAAAUCAGGGGAACUAAUUUCUACCAAACAAACAAAAUAUACGGUAGCAUCUCAGGAAAAAAUAUCAAGAUGAUUACGAUAAACAACCUAGGAUGGCAUGAGAUAGCCAACAGUUUGGUCAAAUAUAUGUUACUUUAGAUAACAAAAGCGUACAAGACACAUUUGGUUAAUUACAUGCCUUGCACGCUUGAAUCGACCCAACCGGCUAGGUUUCUUCCUCCACCGCCUCAGUUAAGUACAUCACCAUGAUUAAGCUCAUGACCUUGUAGUGUCUAUCGUCGAGGCUUCAAGACAAACCAAGCACACAGUUACCUUCACACAAUCACGAAGCAGUUCAUCAAAAGAGCUAUGUUGUUGCUCAAAUAUAUACCACCCUUGUGCUUGCUUGCCUUUUCCAUUCUACCACAAUCGAUCAGCUUCAUGAGCUAGCAUCUGACCUCUUCCCCUUCACCUUGUUGGUGUUGUUGUGUUUCUACUGCCUACCGGAAAUGAAUGUUGGCACAAGUGGUGCGGUAGGAGAAGCGGCAGGGAGGCUGCCGACAGGCGCAGUGAAGACUUACGGAUGAGCGUUGUGAGAUCAGGCAGGACGAGGUGGAGUACGUGCAGCACUUCCGUAGCCACGAGCCCGGUAGCAACCAGUGAAAAUCCUUUGUCACCAAGCACGACAGAGUGCCCACCAAACUGAAAGAAGAUUGGAUCAAAGCGAGGUCGGAAGCGGAAAUCGAGUUUGGAAACAGAGCAGGAAUCGGCCGGAGUCCAGAUCGGCUAUGGUUAGGAUCGGCUAGGUCUGAGUUGGGCUAAGUAAGUCGAUACAGCCGAUUCCGACAAUAUGACUUGUACACGACAUCGGGUUCAAGUUAAUGUACUUCAAGAUGAUUGCCAUGCACGGAUAGAGUCCUGGGAAGGCAAUUGUAUCUAUUAAUUAGGAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.26%
ME_num:
MEP:
7.32%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
1.00
Avg Expression:
142.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.06207246072198 | 7.50367389650718e-06 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.95143453100038 | 3.70698643401774e-06 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.93579551909127 | 0.000425974766494013 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.1958535856159 | 5.91177263590914e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.36536617182238 | 3.24677839991013e-05 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.18895624345201 | 1.13542900544855e-06 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.06315288376497 | 1.04333668188811e-05 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.76689471988841 | 5.25174003815492e-06 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.31578745905852 | 0.0228018616426629 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.96202497413651 | 5.32520088413714e-05 |
11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 2.13941015686835 | 1.06733089358091e-05 |