OSA-PHAS4341082


Function Link


Basic Info

Chr:

Chr6

Start:

16910990

End:

16916774

Strand:

+

Ref_name:

LOC4341082

Sequence
(XM_015786386.2):

GUACACGUGAAGCUCCCGUUUUCCUCCUCCGUCCACUGGGCACGGGAGUGGGCUGAGAAGAAGACACCAUAAACGAACUGUCUCCCUCGUCUCGUCUCGUCCCGUCGUCCCGCGCGUCACCUCUCCUCUUCCGCUACGCCGCGCCACCGCCACCGCCUCCGCCGCCCUAGGGCCCUUCCCAUCCCCACCGGCUGCGCCCGCCGUCCGCAGCCGCUUCGUUCCCUCCCCCCACCCCGUCGCCACUCGCCACACCGUGGCCGGGAACGGCAAGCCACACCGCACCUGCUGCUCUCCUCCUCCUCAUCUUCGCCGCCGCGGACCGAGCCACUCUCCGAUCCUACGGGGAGGUAGAUCUAUAAUUGCAAAGUUUAGGCCCUAGCCAAAUCUCAGAAUGGAAAUAUCUGGUCCAGGUGGUGGCAGCAACCACACGCAUCUAACUGAGAGAGGAGAAAUAUUAGAGGAUGCACAUGAUAAGAAAGAUGAGCUGCGAGCUGAAGAUCUUGAACUGAAGUUAAAUGAACCUUUUCUUAACUUCAUGAGACUCAGACUUAUACCGCAGUGGGGUCAAGGCUUUACUUCUGAGUGCCAACUCAAAACUGCACAAGAUCAGCUUGAAUGGCACAGCCAGAUAAAGCCAACAAGAUUGCCUGUCCUGGCACUUCACAUUGGCAACAAAAAGUUCGCUCGGACAAAUGAAUGCGACAUAUUUGUUAAGUUCUUCUACCACAAAAAGUCAGUUAUAUUCCAAAUGUCCAAGGACAAGCUGUGUAGGAAGGUUGACAUCCCCUUCGACGACAUUACAUCCUUUUGUUUCGUUUUCGGACAGCAGUCUGAUAUCCUGACAAUAGAGGUCAAAUCUUCAUUGAUACCCUUAAGUGCUGCUAAGCCACUUCCAGGGAAGUUUCUUGAUUGGAAAGUAGAUUACUCAAAAGAUGAUGAGUACUAUUUUCCUGAAUCAAAAUCUUUAUGGGUUGAGGCUGAGAAGGGGAGCUUGGAAAAGACCUAUGCAAAACUCAAGUACACUAAUCCUCAUUUGACAUGCUUGUUUACGGAUGCAGGGGAACAAGGAGGAUCUGACUGGCUGCAUGCACCAUACUGGGGUUGGGAGGCAACAGGAUCGCCAUGCUUCCGAAUAAAUCAACUGCACCAGUGUGGAAGCCGCAUCCUAUGUAUUGUUAAGAGACCUGGAGCUUCGAUAGGACACAAAACUCAUUGCACCAGGAGUGGAUCGGUUCACAUCAAUCGAGUUCUUUGUUGACGAUGGUGGCAGCUACACGAUGUGCCCUCCAUGGGACACCGUCUGUGGCCUCCCCAGCCAUCGCCGCGGUCACGCUGUGCUUGCAGAUACCUUCAGGAUAGUUGAAUUUCACCUCGUCGUCCAUGUUCUGUGUUUGUUGUACUUUAUUCAGCCUCCCAGAAAAGAUUGUUGCUGUCACGGUUCAAAACAACAAGAACUAAGCCUACUAGGGUAAAUGGUAGAAACACCAAAAACCGAAAACAUGUAACUGAACUAAAAGCUACCCUCGAAA

Sequence
(XM_015786387.2):

GUACACGUGAAGCUCCCGUUUUCCUCCUCCGUCCACUGGGCACGGGAGUGGGCUGAGAAGAAGACACCAUAAACGAACUGUCUCCCUCGUCUCGUCUCGUCCCGUCGUCCCGCGCGUCACCUCUCCUCUUCCGCUACGCCGCGCCACCGCCACCGCCUCCGCCGCCCUAGGGCCCUUCCCAUCCCCACCGGCUGCGCCCGCCGUCCGCAGCCGCUUCGUUCCCUCCCCCCACCCCGUCGCCACUCGCCACACCGUGGCCGGGAACGGCAAGCCACACCGCACCUGCUGCUCUCCUCCUCCUCAUCUUCGCCGCCGCGGACCGAGCCACUCUCCGAUCCUACGGGGAGGUAGAUCUAUAAUUGCAAAGUUUAGGCCCUAGCCAAAUCUCAGAAUGGAAAUAUCUGGUCCAGGUGGUGGCAGCAACCACACGCAUCUAACUGAGAGAGGAGAAAUAUUAGAGGAUGCACAUGAUAAGAAAGAUGAGCUGCGAGCUGAAGAUCUUGAACUGAAGUUAAAUGAACCUUUUCUUAACUUCAUGAGACUCAGACUUAUACCGCAGUGGGGUCAAGGCUUUACUUCUGAGUGCCAACUCAAAACUGCACAAGAUCAGCUUGAAUGGCACAGCCAGAUAAAGCCAACAAGAUUGCCUGUCCUGGCACUUCACAUUGGCAACAAAAAGUUCGCUCGGACAAAUGAAUGCGACAUAUUUGUUAAGUUCUUCUACCACAAAAAGUCAGUUAUAUUCCAAAUGUCCAAGGACAAGCUGUGUAGGAAGGUUGACAUCCCCUUCGACGACAUUACAUCCUUUUGUUUCGUUUUCGGACAGCAGUCUGAUAUCCUGACAAUAGAGGUCAAAUCUUCAUUGAUACCCUUAAGUGCUGCUAAGCCACUUCCAGGGAAGUUUCUUGAUUGGAAAGUAGAUUACUCAAAAGAUGAUGAGUACUAUUUUCCUGAAUCAAAAUCUUUAUGGGUUGAGGCUGAGAAGGGGAGCUUGGAAAAGACCUAUGCAAAACUCAAGUACACUAAUCCUCAUUUGACAUGCUUGUUUACGGAUGCAGGGGAACAAGGAGAAACAUCUGCAAGACAUGCCACCUGAUGGUGAAUGCAUGGAAGAAGGAGGAUCUGACUGGCUGCAUGCACCAUACUGGGGUUGGGAGGCAACAGGAUCGCCAUGCUUCCGAAUAAAUCAACUGCACCAGUGUGGAAGCCGCAUCCUAUGUAUUGUUAAGAGACCUGGAGCUUCGAUAGGACACAAAACUCAUUGCACCAGGAGUGGAUCGGUUCACAUCAAUCGAGUUCUUUGUUGACGAUGGUGGCAGCUACACGAUGUGCCCUCCAUGGGACACCGUCUGUGGCCUCCCCAGCCAUCGCCGCGGUCACGCUGUGCUUGCAGAUACCUUCAGGAUAGUUGAAUUUCACCUCGUCGUCCAUGUUCUGUGUUUGUUGUACUUUAUUCAGCCUCCCAGAAAAGAUUGUUGCUGUCACGGUUCAAAACAACAAGAACUAAGCCUACUAGGGUAAAUGGUAGAAACACCAAAAACCGAAAACAUGUAACUGAACUAAAAGCUACCCUCGAAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

131

LEP:

26.63%

ME_num:

358

MEP:

72.76%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.71

Avg Expression:

7.71

Tip: OSA-PHAS4341082 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.250858353461570.0399854587867796
2Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift1.03571894473030.0126655801336873
3Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift1.15770306326420.000593628073363893
4Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.542178691274110.000161812135002492