Chr:
Chr6
Start:
16910990
End:
16916774
Strand:
+
Ref_name:
LOC4341082
Sequence
(XM_015786386.2):
GUACACGUGAAGCUCCCGUUUUCCUCCUCCGUCCACUGGGCACGGGAGUGGGCUGAGAAGAAGACACCAUAAACGAACUGUCUCCCUCGUCUCGUCUCGUCCCGUCGUCCCGCGCGUCACCUCUCCUCUUCCGCUACGCCGCGCCACCGCCACCGCCUCCGCCGCCCUAGGGCCCUUCCCAUCCCCACCGGCUGCGCCCGCCGUCCGCAGCCGCUUCGUUCCCUCCCCCCACCCCGUCGCCACUCGCCACACCGUGGCCGGGAACGGCAAGCCACACCGCACCUGCUGCUCUCCUCCUCCUCAUCUUCGCCGCCGCGGACCGAGCCACUCUCCGAUCCUACGGGGAGGUAGAUCUAUAAUUGCAAAGUUUAGGCCCUAGCCAAAUCUCAGAAUGGAAAUAUCUGGUCCAGGUGGUGGCAGCAACCACACGCAUCUAACUGAGAGAGGAGAAAUAUUAGAGGAUGCACAUGAUAAGAAAGAUGAGCUGCGAGCUGAAGAUCUUGAACUGAAGUUAAAUGAACCUUUUCUUAACUUCAUGAGACUCAGACUUAUACCGCAGUGGGGUCAAGGCUUUACUUCUGAGUGCCAACUCAAAACUGCACAAGAUCAGCUUGAAUGGCACAGCCAGAUAAAGCCAACAAGAUUGCCUGUCCUGGCACUUCACAUUGGCAACAAAAAGUUCGCUCGGACAAAUGAAUGCGACAUAUUUGUUAAGUUCUUCUACCACAAAAAGUCAGUUAUAUUCCAAAUGUCCAAGGACAAGCUGUGUAGGAAGGUUGACAUCCCCUUCGACGACAUUACAUCCUUUUGUUUCGUUUUCGGACAGCAGUCUGAUAUCCUGACAAUAGAGGUCAAAUCUUCAUUGAUACCCUUAAGUGCUGCUAAGCCACUUCCAGGGAAGUUUCUUGAUUGGAAAGUAGAUUACUCAAAAGAUGAUGAGUACUAUUUUCCUGAAUCAAAAUCUUUAUGGGUUGAGGCUGAGAAGGGGAGCUUGGAAAAGACCUAUGCAAAACUCAAGUACACUAAUCCUCAUUUGACAUGCUUGUUUACGGAUGCAGGGGAACAAGGAGGAUCUGACUGGCUGCAUGCACCAUACUGGGGUUGGGAGGCAACAGGAUCGCCAUGCUUCCGAAUAAAUCAACUGCACCAGUGUGGAAGCCGCAUCCUAUGUAUUGUUAAGAGACCUGGAGCUUCGAUAGGACACAAAACUCAUUGCACCAGGAGUGGAUCGGUUCACAUCAAUCGAGUUCUUUGUUGACGAUGGUGGCAGCUACACGAUGUGCCCUCCAUGGGACACCGUCUGUGGCCUCCCCAGCCAUCGCCGCGGUCACGCUGUGCUUGCAGAUACCUUCAGGAUAGUUGAAUUUCACCUCGUCGUCCAUGUUCUGUGUUUGUUGUACUUUAUUCAGCCUCCCAGAAAAGAUUGUUGCUGUCACGGUUCAAAACAACAAGAACUAAGCCUACUAGGGUAAAUGGUAGAAACACCAAAAACCGAAAACAUGUAACUGAACUAAAAGCUACCCUCGAAA
Sequence
(XM_015786387.2):
GUACACGUGAAGCUCCCGUUUUCCUCCUCCGUCCACUGGGCACGGGAGUGGGCUGAGAAGAAGACACCAUAAACGAACUGUCUCCCUCGUCUCGUCUCGUCCCGUCGUCCCGCGCGUCACCUCUCCUCUUCCGCUACGCCGCGCCACCGCCACCGCCUCCGCCGCCCUAGGGCCCUUCCCAUCCCCACCGGCUGCGCCCGCCGUCCGCAGCCGCUUCGUUCCCUCCCCCCACCCCGUCGCCACUCGCCACACCGUGGCCGGGAACGGCAAGCCACACCGCACCUGCUGCUCUCCUCCUCCUCAUCUUCGCCGCCGCGGACCGAGCCACUCUCCGAUCCUACGGGGAGGUAGAUCUAUAAUUGCAAAGUUUAGGCCCUAGCCAAAUCUCAGAAUGGAAAUAUCUGGUCCAGGUGGUGGCAGCAACCACACGCAUCUAACUGAGAGAGGAGAAAUAUUAGAGGAUGCACAUGAUAAGAAAGAUGAGCUGCGAGCUGAAGAUCUUGAACUGAAGUUAAAUGAACCUUUUCUUAACUUCAUGAGACUCAGACUUAUACCGCAGUGGGGUCAAGGCUUUACUUCUGAGUGCCAACUCAAAACUGCACAAGAUCAGCUUGAAUGGCACAGCCAGAUAAAGCCAACAAGAUUGCCUGUCCUGGCACUUCACAUUGGCAACAAAAAGUUCGCUCGGACAAAUGAAUGCGACAUAUUUGUUAAGUUCUUCUACCACAAAAAGUCAGUUAUAUUCCAAAUGUCCAAGGACAAGCUGUGUAGGAAGGUUGACAUCCCCUUCGACGACAUUACAUCCUUUUGUUUCGUUUUCGGACAGCAGUCUGAUAUCCUGACAAUAGAGGUCAAAUCUUCAUUGAUACCCUUAAGUGCUGCUAAGCCACUUCCAGGGAAGUUUCUUGAUUGGAAAGUAGAUUACUCAAAAGAUGAUGAGUACUAUUUUCCUGAAUCAAAAUCUUUAUGGGUUGAGGCUGAGAAGGGGAGCUUGGAAAAGACCUAUGCAAAACUCAAGUACACUAAUCCUCAUUUGACAUGCUUGUUUACGGAUGCAGGGGAACAAGGAGAAACAUCUGCAAGACAUGCCACCUGAUGGUGAAUGCAUGGAAGAAGGAGGAUCUGACUGGCUGCAUGCACCAUACUGGGGUUGGGAGGCAACAGGAUCGCCAUGCUUCCGAAUAAAUCAACUGCACCAGUGUGGAAGCCGCAUCCUAUGUAUUGUUAAGAGACCUGGAGCUUCGAUAGGACACAAAACUCAUUGCACCAGGAGUGGAUCGGUUCACAUCAAUCGAGUUCUUUGUUGACGAUGGUGGCAGCUACACGAUGUGCCCUCCAUGGGACACCGUCUGUGGCCUCCCCAGCCAUCGCCGCGGUCACGCUGUGCUUGCAGAUACCUUCAGGAUAGUUGAAUUUCACCUCGUCGUCCAUGUUCUGUGUUUGUUGUACUUUAUUCAGCCUCCCAGAAAAGAUUGUUGCUGUCACGGUUCAAAACAACAAGAACUAAGCCUACUAGGGUAAAUGGUAGAAACACCAAAAACCGAAAACAUGUAACUGAACUAAAAGCUACCCUCGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.63%
ME_num:
MEP:
72.76%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.71
Avg Expression:
7.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.25085835346157 | 0.0399854587867796 |
2 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.0357189447303 | 0.0126655801336873 |
3 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 1.1577030632642 | 0.000593628073363893 |
4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.54217869127411 | 0.000161812135002492 |