Chr:
Chr6
Start:
2106663
End:
2111881
Strand:
-
Ref_name:
LOC4340067
Sequence
(XM_015788892.2):
AGGGAGUAAGAGUUAGGCGUCGAUAGAGCAUUAAUUCGGUCGUUUCAGGGCUUCUAUAGCCGGCCCGGUGACGACAUCCUCUGGAUACACUCGCAAGGCCCACUAGCUAGCGAGCCCCCUUCGUUCCUCUGAUCCUCUCCGCUUCACGCCGUGCUCGAGCCGAGCGAUCGAUCGAUCCACCCGCACCGUGCACCCGGCCGGAAUGGAGGUGGCGGCGGCGGGAGGUGGUGCCCGCCGCCGCUCCCGCCGCCGCGCGGAGCAGCCCCCGCCGCCGUGCAGGCCAACCAACGACGACGACGCCGCGGCCAGCAAGCUGUCAUGUGUUAAUAAAGGAUACAUGAAGGAUGAUUAUGUGCAUUGUUAGGCAAAUAACAAAAGGGGCUCCAAUAAUAAAUUGAGUUCCUCAGUGCUGGAAAUGUCAGGAUGGUCAAAAGAGGAAACAGAAACUUGGUGCUGCUUUGAUACGACAUUCUUCCAGUUGCAGAAAAAGACAGAGCCCACGCACGACGUGGAUAUAGGGACAGCUUGACUUCAUGAGUAGACUUUGAUUGCCUGAGUCUUUAGGUUGGGGUUCAAGGUCUGGAAGAGAAUUACACAUGACUUUAACCCCGUCUUUGGCUCUUCUCUUCUUAUAUCUACUCUGGCCUUCAUGGAAACUUGACUAAUCAAUACCCUAGCAACUUCUGUGAUAACUAAUCAGAAGCUAACUUGACAGUGCUAGUCACAGGCUCUACUGGAUGUCCGUGAUGAGAGGAAGGAUGCAAGGGGUGUGGCUUGCAGCAUUAAUCUCCCUCCUUUGCCACUCUAUCGCAAACGCAGGGAAGGAAGCCGCUGCUGCUGUGUGCAUCACCAGCGAGAGGGAUGCUCUGCUUGCCUUCAAAGCAGGCCUUUGUGCUGACUCCGCUGGUGAGCUGCCUUCCUGGCAAGGCCACGACUGCUGCUCAUGGGGUAGCGUGUCCUGCAACAAGAGGACUGGCCAUGUCAUCGGCCUUGACAUCGGCCAGUAUGCUCUUAGCUUCACAGGUGAAAUCAACUCAUCUUUGGCUGCUUUGACUCAUCUACGGUACCUUAACCUGAGUGGAAACGACUUCGGUGGUGUGGCCAUCCCAGACUUCAUAGGCUCCUUCAGCAAGUUGAGGCAUCUUGAUCUCUCCCAUGCUGGUUUUGCCGGGUUGGUUCCUCCUCAACUUGGCAAUCUGUCAAUGCUCAGCCACCUUGCUUUGAACUCCUCUACGAUCAGAAUGGAUAAUUUCCAUUGGGUUUCUCGCCUCCGUGCCCUCAGGUACUUGGACCUCGGCAGGUUGUAUCUUGUUGCAUGUUCAGAUUGGUUGCAGGCAAUCAGUAGUCUCCCUUUGCUUCAAGUGCUUCGCUUGAAUGAUGCAUUUCUCCCUGCCACCAGUUUGAAUUCAGUUUCUUAUGUCAAUUUCACGGCCCUCACAGUGCUUGAUCUUAGUAACAAUGAGCUGAAUUCUACUUUACCAAGGUGGAUCUGGAGCCUGCAUUCUCUUUCUUACUUGGACUUGUCUAGUUGUCAGCUUUCUGGAUCGGUUCCUGAUAACAUAGGGAACUUGUCCUCCCUGAGUUUUCUUCAGUUGCUGGAUAACCACCUGGAAGGAGAGAUACCGCAACACAUGAGUAGAUUGUGCAGCCUGAAUAUCAUCGACAUGUCUAGAAAUAAUUUAUCAGGGAAUAUUACAGCAGAAAAGAAUCUGUUUUCCUGCAUGAAGGAGCUGCAAGUUCUCAAAGUUGGCUUCAAUAAUCUAACUGGAAAUCUAUCUGGUUGGCUUGAGCACUUGACAGGUUUAACUACUCUUGAUCUCAGCAAGAACUCUUUCACUGGACAAAUACCAGAAGAUAUUGGCAAGUUAUCACAAUUGAUUUACCUGGAUCUUUCAUACAAUGCAUUUGGGGGUAGACUGUCUGAAGUCCAUCUUGGCAAUCUAUCUAGGUUGGAUUUCCUGAGUUUAGCAUCAAAUAAACUGAAAAUAGUAAUUGAACCCAACUGGAUGCCAACUUUUCAACUCACAGGUCUAGGACUACAUGGUUGCCAUGUAGGACCCCACAUCCCUGCCUGGCUGCGAUCACAAACCAAAAUUAAGAUGAUUGAUCUAGGAAGCACAAAAAUCACAGGUACAUUACCUGAUUGGCUCUGGAACUUCUCUUCAUCAAUCACUACCUUGGAUAUCUCAAGUAACAGCAUCACUGGCCACUUGCCAACAAGCUUGGUGCAUAUGAAAAUGUUGAGUACUUUCAAUAUGAGAUCAAAUGUACUUGAAGGAGGCAUUCCUGGUUUACCAGCUAGUGUUAAAGUGCUGGAUCUAUCCAAAAACUUCUUGUCUGGAUCCUUACCACAAAGCUUAGGAGCCAAGUACGCUUAUUACAUCAAGCUCUCAGAUAAUCAACUGAAUGGAACUAUCCCAGCAUAUCUUUGCGAGAUGGAUUCGAUGGAAUUAGUUGACCUCUCAAACAACUUAUUUUCAGGUGUUCUACCAGAUUGUUGGAAGAAUUCCUCAAGACUGCAUACCAUUGACUUUUCGAAUAAUAAUCUUCAUGGAGAAAUACCUUCAACCAUGGGUUUCAUAACCUCCCUUGCAAUAUUAUCUCUUAGAGAGAACAGUUUAUCUGGCACAUUACCCUCCUCAUUGCAGUCAUGUAAUGGAUUGAUCAUUCUCGAUCUCGGAUCUAAUAGUUUAUCAGGAAGCUUACCAUCAUGGCUGGGUGAUAGUCUGGGCUCUCUGAUUACUCUAUCUUUACGCUCAAAUCAAUUUUCUGGUGAAAUACCUGAGUCACUGCCCCAACUUCAUGCCCUGCAAAAUUUAGAUCUUGCUUCUAACAAAUUAUCUGGUCCUGUACCACAAUUUCUAGGAAAUUUAACAUCCAUGUGCGUUGAUCAUGGAUAUGCUGUCAUGAUUCCUUCCGCCAAAUUUGCUACAGUUUAUACUGAUGGACGUACAUAUUUGGCCAUACACGUAUACACUGAUAAACUUGAGAGUUACAGCUCAACGUACGAUUACCCGCUAAACUUUAUUGAUCUAUCAAGAAAUCAAUUUACAGGAGAAAUCCCCAGAGAAAUAGGAGCAAUAUCUUUUUUGCUUGCCUUGAAUCUAUCAGGAAAUCACAUACUUGGGAGUAUUCCUGACGAAAUUGGGAACCUCAGUCAUUUAGAGGCACUUGAUCUCUCGUCGAAUGAUUUGUCAGGAUCAAUUCCUCCGAGCAUCACAGAUUUGAUUAAUCUAUCGGUUCUGAAUUUGUCCUACAAUGAUCUGUCAGGAGUGAUACCAUGUAGCUCUCAGUUUUCAACUUUCACAGAUGAACCAUAUCUAGGCAAUGCAGAUCUUUGUGGAAAUUGUGGUGCCUCGCUAUCAAGAAUAUGCUCGCAACAUACUACUACUAGAAAACAUCAGAAUAUGAUUGACAGGGGGACAUACUUAUGCACUCUGCUAGGGUUUGCAUAUGGAUUAUCUGUCGUUUCUGCCAUCCUCAUAUUCAGCAGAACUGCAAGAAAUGCCUACUUCCAGUUCACUGACAAGACAUUGGAUGAGUUCCGUGCUAUAGUUCAGAUAAAACUCAACAGGAUCAAAGCAGGAAGACGCCAAUCCAUGGAAAUUUAUCGUCUUGGCAGCCAGAACUCAAUCACCUGCUACGAAUUGGAAUUUGGAUAUACUACGGAAGGUAACUAGUUUAUGUUCUUGUAUAACUUGUAUGGUACUCCCUCCGUCCCAAAAAAAGAUAAACCCUGGUUUCCGUACCCAAUGUUUGACCGUCCGUCUUAUUUAAACAAAUUAUGAAAAAAAUUAAAAAGACAAGUUACGCACAAAGUAUUAAUCAUGUUUUAUCAUCUAACAACAAUAAAAAUACGAAUUAUAAAAAAGUUUCAUAUAAGACGGACAGUCAAAGUUAGACACGCAAUUCCAGGGUUUGUCUUUGACGGAGGGAGUAGGUCUGUAGACUGCUGGUUCAGAUAGGAGAUCCAAGUUUAGGUAAUUCUGGACAUCUGGACAUCUGGUAAUUCUGGACAGCUGGGUUCUGGUUCAGAUACAACCAAUGUAGUUCCUUGUUGUAUACAAGAUGCAUGCAUCACUACGUCAGUGUAUCUUUGCCAUGUUUUAAUAUAGUGCAUCCAGAGUUUUUUUUUUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.07%
ME_num:
MEP:
76.02%
HE_num:
HEP:
6.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.81
Avg Expression:
37.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.10168678265402 | 4.27958384665007e-16 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.1567429986367 | 5.4298070825558e-21 |
3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.27379902689587 | 0.00311556212305222 |
4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.27388324885073 | 0.0032178363857764 |
5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.27399043606436 | 0.00312731328726665 |
6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.30365537023732 | 1.19444714649563e-06 |