Chr:
Chr5
Start:
29009136
End:
29013254
Strand:
-
Ref_name:
LOC4339739
Sequence
(XM_015782222.1):
AAUCGAUCGAUCAGGUUAAUUAAGAAAUAAGCACGGAAUAAGACAAGCAUAUAAACAUCAACUGUAUAGUGGUGGCAGAAGUAUUUUAACACACAACGCACGCGCACCAAUCUCAUUUCUAGUUUACUCCAAAUUAAAGACCAGUCAGAAUUUUCGCCUUUGCAAAACUCCUCUCAUUUCAUUUCCUCCCAAGAGUCAAGCUAGCCCUUCUUGCUUGCUCCGUUCAACGCCUCUUCCCCAGCUUCACAGUACUCCAUGUCUGGACCUGGAGGAGGAGGUCAUGGCCUCUACGAGGAUCAUCCUGCAGCCGCCGGCUUCCUCCCCUUCGACCACGACGACGACGUGGUGGCCAGCUUCUUCUUUGGCAGAUCGGCGGCGUCCGGAGGAGGAGCCGGCGCCGGCGCCGGCGCUGGAGACGAUGAUGGUGUUGGGCUCAUCACGCCCUACUCCAGCAUCACGGAUUAUCUGCAAGGCUUCCUGCAGGACCCCGUGUACGCGUCGUCCCCGUUGGGCGGCGAUGCUGCCGUGAAGCACGAAACGGUGGUGGAUCAUCCCAGUCAGGCCGGCGGCGUGGCGGCGGCGCCGGCCACGCCGAACUCGUCGGUGCUGUCGUCGUCCAGCGAGGCGGCUGGAGGGGACGAUCUGCGCCGGUGCAAGAAAGGUCGUCGGCCGGAGGACGAGGAGGAGGAGGAGAUUGACGAUGAGGGAUCGGCCGUUCAGAGUUGCACGAACAAAAUGAAGAAUAAAAAAGGGGCGAAGAAGGAGCGUGAGCCACGUGUGGCGUUCAUGACCAAGAGCGAGGUCGACCACCUCGAGGACGGCUACCGGUGGCGCAAGUACGGCCAGAAAGCCGUCAAGAACAGCUCCUACCCAAGCUACUACCGGUGCACGGCGCCGCGGUGCGGGGUGAAGAAGCGGGUGGAGAGGUCGGAGCAGGACCCGUCCAUGGUGAUCACCACAUACGAAGGGCAGCACACGCACCCGAGCCCCGUGAGCUACCACAUGCACAGGCAGCAGGGGCUCAUGCAUGUGAGCGCGCGCGGUGUCAUGCCCGGCGCCGCCGGCGCCUACCAGUUCGGCGCGCCGCCGCCGCCGCUCCUUGGCUUCGACGAAGCCCUCGCCGCUCGGUCCCAGGACACAGUGCUGGUAUCACAGGAAGACAGAUUAUCACAGCAACAGAGGUCUCUUUAUUAUAGAGUAGAUGUACAGUCAUGUUGGGCUGCGGACAGAUCCCGAGCUCACAACUGCAUUACAAAAGGGAAACGGAAGCCGGGACUUGGACCAAACAACACAGGCGCGACUUGGGAACUAGGCCGAAACCCUAAAACUCAUCGUAGCCGGCUUGCUCCUGGAAGAACUCCUCAUCAGCAGGAUCCGCUUCGUCUUCUUCAGCGACUGGGGGGGGAUUAUUUAUAUAGAGCAAGGAGGGGGGUACACUUUACCCACACGACAUUACUAACCCGGAUCACCCAGCCCGUGGGGAUCAGCCACGUCGGGAGACCUCCAAGCUUUCAUGACAAGGCAUUUCCAAAGCCGAUACAGGUUUACCAUAUGCCGACGAGAGGGGUCCCAGACCAACAACAGGAAUCGGUUCUUAAGUGCGAGAGCGGGAAAACCGUACACCCGGCUCAAGAUGUUCAAAGGUGGCUUGCCUUGCUCGAGAUCUGGAGCUUGAUCCUCGAAAUCCUCGCACUGCGGGUCUUCGGGCUCCGGAACUACACGCGAAACGGGACAACUCAACAAACGGCGAAAAUGAAGCCCUAAUAAUGACCUCUAAGCGUGCCAUUAGAUAGAUCUCGAGAUUUGAGGAAUUUUGGAAGUUGAACGGAGUCAAACGGAUCUACGGUUGGGAAGAUAUUGAAUUUCUAAGAUUAUUGGAUUUUUGGUCUAAAGGAAAAGGAUUUAAUUAAAUCCUUUUUGGAAAAGAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.13%
ME_num:
MEP:
51.63%
HE_num:
HEP:
15.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.85
Avg Expression:
18.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.82390526166831 | 0.00032628434963248 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.41589729997075 | 4.00574863161217e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.69508812455779 | 0.000212809555510777 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.61423664427118 | 8.25348760727345e-17 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.68816921785468 | 0.00125832093343373 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.44489693560103 | 1.85939286618058e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.20326087204884 | 6.59684075182936e-20 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.671423870661 | 6.8272246557176e-19 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.27754063700344 | 3.50823393809708e-44 |
| 10 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.78950120190255 | 0.0130416702452002 |
| 11 | Nipponbare // coleoptile // wild_type_plus_1hr_shade--/--Nipponbare // coleoptile // wild_type_plus_1hr_white_light | 2.52985168843706 | 0.011590449430311 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.8223468154963 | 0.000295318120902669 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.42186234291857 | 3.07721167631311e-17 |
| 14 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 2.29131073970254 | 3.84726924350309e-13 |
| 15 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 4.12644065388391 | 3.74136846053951e-88 |
| 16 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.65331471070371 | 0.00984840693004068 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.0324775621523 | 9.23112940422226e-19 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.94766300278309 | 1.66629537397406e-05 |
| 19 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.99631946108701 | 4.96710724637159e-54 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.99623970969868 | 5.86294842929834e-54 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.99613173416161 | 5.35404819499259e-54 |
| 22 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.25020091451392 | 0.0117225199374909 |
| 23 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.15832356799522 | 1.40486447855448e-48 |
| 24 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.41623231461535 | 0.00623319650919077 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.20766349192131 | 4.79972443644358e-11 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.5001923525736 | 0.000409005570238583 |