RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS4339631

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

28176558

End:

28182471

Strand:

+

Ref_name:

LOC4339631

Sequence
(XM_015783945.2):

UGCUUCCCUCCGCUCUCUUGGUGUCUCCUCCUCUACUCCGCUUCUCUCCACCUCGCCGCGACGAGAGAGAGAGAGAGGGAGGGGGGAGAGAGAGAGAAGUAUCGAUCCAUCCGCGUUUAUCUCCGCGUAUGUAUUAUAGUUCAUAUUGCCGCAGCAUUCAUUAAUAUGCUAACAUUGAUGAUGAAGAACAAUUGUAAUGAUGAUGAUAUUGGGAGUGAGUUUUAUGACUCCUUUAAUUUAGAUAAUACCAUAGAGAAUGUACAUUCACAAAACAAUAAGUUGGAGCUGGCUAAAACUGGAGAGUUCAAUCAAUAUGAGCAAACAACCGGAUUUUCUUUGCCUUGUGGAGAUCUGCAGUAUGAUGUGUACCUAAGGACUCAGAUAGCCGGGCAGGAUAAUAAGAGUGGGGAAGGUGCUGAUUUUAUGGAUGAUGGAACUUUUACUUUGCUUAAGGAUUUGGUAACUGAAUCAAGAACUUCGUCACCAUAUUAUGAGAAGGAUCAUCAGUUAAAUUCACUAAAUUAUGUCAAUCAAGAUGGACAUGGCAUUCCUACAACAACAAAUCCUACCUGGGACUUGACUCAGAGUUGCAAUCCGUUGAACCAUUCCCUGACAGAGGAUUCUGUUCCUUUCAAUGUUGGUACUUCAGCUGGAGUCCUGACUAAUGCCACCUCAAAUGAUUUUAUUCCCAUUGAUGAGCUAGCAAUCACGAGUGGGAGAUAUGGAGUACUACCUUCCAUUGAGAAAACUGAAGAAGGCAGUAUUGCCAUCGACGAAGCUAACUCGUUUGGGGCAACUGCAACCAUGUGCUAUAAUAGCGUUCAUUUCUCUCAUUGGAUUGACCAGAAUUUAACUGGUCCAUUGCCUGAUUUAGCUGAUCUUCCUGACAUAUAUCCAGACAGUUUCUUACCAACACCUAGAAAGAACAUCACUCUUGUUCUUGAUCUUGAUGAAACUCUUAUCCACUCAUCAGCGGUUGACCGUGAUGGUGCUGACUUUUCAUUUCCUAUGUACCAUGGCUUAAAAGAGCACACUGUGUACGUGAAGAAGAGGCCACAUGUCGACACCUUCCUUCAGAAGGUGUCUGAGAUGUUUAAGGUUGUUAUCUUCACAGCUAGCCUAAGCUCCUAUGCAAAUCGGCUGCUUGAUAUGUUGGAUCCCAAGAACAUAUUUUUUACCAAGCGUUAUUUCCGGGAUUCAUGCCUGCCUGUAGAUGGUAGCUAUCUUAAGGAUCUGACUGUUAUUGUUGCUGAUCUCGCAAAGGUUGUGAUAAUCGACAAUUCUCCAGAGGUUUUCCGGCUACAGGAGGAAAAUGGUAUACCUAUAGAGAGUUGGACCAGCGACCCGGCUGACAAAUCAUUGGUUGAGCUGAUACCCUUCCUGGAAGCCAUUGCUGUUGCAGAUGACGUCCGACCAAUUAUCGCCCAAAUGUUAGGCCGUCCAAGAUCAAUUGCUUAGAUGUUGCGACAAAUAUCAGAAACUGCUCAUUUGCUUAUUUUACAAAGAAUUUUUUCCCCAUAGUUGAACAGGAUACCUGUGUGGUACAUCAUCGAACUAGUUUCCCAUUGCUUCUUUUACCGAGUUUGAUUCCCAAGAUUUUGUGAAUUCUUUUGGUGGGAAUGUUAAUUUUUGUACUUGCAGUUCUGUACGUAGCGUCUACCUUAAACUAGCCUAUGUACAAACAAAUUCAAUCAUAGGAGACUAAAGAUUAUACUCCCUCCGUUUUUUAAUAGAUGACGCCGUUGACUUUUUCUUACAUGUUUGACCAUUCGUCUUAUUUAAAAAUUUUAUGCAAAUGUAUAAGAUAUAAAUCACACUUAAAGUACUAUGAGUGAUAAAACAACUCAUAACAAAAUAAAUUAUAAUUACGUAAAUUUUUUGAAUAAGACGAAUUGUCAAACAUGUACGAAAAAAUCAACGGCGUCAUCUAUUAAAAAACGGAGGUAGUAUUUCCUUUCCAAGUUCAUCCUCUGAUUUAUCUACAUCAUAUGGAUGUGGAUAAGUGGAUUGAUGUUGUCCAGGAGUAAAUUAUAUCAUCCUGCUUGAUCUGACACCCCUUCAUCCUAGUCCAUGAGUCGGGCAAGCUUUGAAGAUGAAGAAGAGGGAGGUUGAAGAUGAUGGACCUGAAGGCGGAGAAGGAGGUCAUCGCUGGAAAAGCUGUGGCGCCGGCGGAGAAGCCAACACCGAAUCCGGUGGAGGUGGAGAUAUAUCCAUUAUACAUGUGUCAUGUGUAUUCGACUUCUGUGCUGCCUGCUCAAGCUGGUAUCAUCUGUGCUGCUUGAUAAAUAAAUUUGCUUAUGGUUAGCACUGGAUAGGAAAACUUUCUGUCUAUCAGUAAUAUCAGUCAGGAUUCAUGAGUUUUUUGGCCCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

28

LEP:

5.69%

ME_num:

376

MEP:

76.42%

HE_num:

87

HEP:

17.68%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.83

Avg Expression:

31.18

Tip: OSA-PHAS4339631 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.888653698466173.22024801876579e-20