Chr:
Chr5
Start:
22526170
End:
22528725
Strand:
-
Ref_name:
LOC4339003
Sequence
(XM_015782683.2):
AGUUAUGGCCAUACCAUCACAAGCUGAGCUAGCUAAGAGCGAGCUUCAUUAACAUACGAGACAGAGAGGUCAGUGAAGGUAGCAAUGGCGGCAGCCUCCUCUGUUCUUCGUUGCUGCCUCCUCGUCGCAGCACUGAUGACGCUGUCCGCAAUGGGAGCUGAAGCCAUCACAAGGCAGUACCUAUUCGAUGUGCAAACGACGAGCGUGACGCGGCUGUGCAGCACGAAGAGCAUCGUGACGGUGAACGGGCAGUACCCGGGCCCCACGCUGUUCGCCCGCGAGGGCGACCACGUCGAGGUCACGGUCGUCAACCACUCCCCCUACAACAUGAGCAUCCACUGGCACGGGAUCCGGCAGCUGCUGAGCGGGUGGGCGGACGGGCCGUCGUACAUCACGCAGUGCCCGAUCCAGCCCGGGGGAAGCUACGUGUACAGGUUCACCAUCACCGGGCAGCGUGGCACGCUGUGGUGGCACGCGCACAUCUCCUGGCUGCGCGCCACCGUGCAUGGCCCCAUGGUCAUCUUGCCCCCUGCCGGCGUCGGGUACCCGUUCCCGGCGCCGCAUGAGGAGGUGCCCAUCAUGUUCGGCGAGUGGUGGAACAACGACACGGAGGCGGUGAUCAGCCAGGCGCUCCAGACCGGCGGCGGGCCCAACAUCUCCGACGCCUACACCCUCAACGGCCUCCCUGGCCCCCUCUACAACUGCUCAGCCCAAGACACGUUUAAGCUGAAGGUGAAGCCCGGGAAGACGUACAUGCUGAGGCUCAUCAACGCUGCACUCAACGACGAGCUCUUCUUCUCCAUCGCCAACCACACGCUCACCGUGGUCGACGUCGACGCGCUCUACGUCAAGCCCUUCACCGUCGACACGCUCAUCAUCGCGCCGGGCCAGACCAGCAACGUGCUUCUCACCGCCAAGCCGACGUACCCGGGCGCCAGCUACUACAUGCUGGCUCGCCCGUACACCACCACGCAGGGCACCUUCGACAACACCACCGUCGCCGGCGUCCUCGAGUACGACGACCCCUGCCCCACCACCGCCGCCGGCAAGAUCGUCCCCAUCUUCUCCCCUACGCUGCCGCAGAUCAACGACACCAACGCCGUCUCCAACUUCACCGCCAAGCUCCGCAGCCUGGCCAGCGCCGGGUACCCGGCGGCGGUGCCGCAGCAGGUGGAUCACCGCUUCUUCUUCACCGUGGGGCUCGGCACCCACCCCUGCGCCGUCAACGGGACGUGCCAGGGACCCAACGGCUCCCGGUUCGCCGCCUCCAUCAACAACGUCUCCUUCGUGCUCCCGGCGACGGCGCUGCUCCAGUCGCACUUCGCCGGCAAGUCCAAGGGCGUGUACGCCUCCAACUUCCCGUACUACCCGCUGAACCCGUUCAACUACACCGGCACGCCGCCGAACAACACCAACGUGAUGAACGGGACCAAGGUGCUCGUGCUGCCGUACGGCGCCAACGUCGAGCUGGUGAUGCAGGACACCAGCAUUCUUGGCGCCGAGAGCCACCCGCUGCACCUGCACGGCUUCAACUUCUUCGUCGUCGGCCAGGGCUUCGGCAACUUUGACCCCAUCAACGACCCGGCCAAGUUCAACCUCUACGACCCCGUCGAGCGCAACACCGUCGGCGUGCCCGCCGGCGGCUGGGUCGCCAUCCGCUUCCACGCAGACAACCCAGGUGUGUGGUUCAUGCAUUGUCACUUGGAGGUGCACAUGAGCUGGGGACUGAAAAUGGCGUGGCUGGUGCUGGAUGGCAGCCGUCCUGACCAGAAGCUCCCGCCUCCACCGUUGGAUCUCCCAAAAUGCUAGGAAUAAAACUCAAGAUCAAUGGUCAAUGAUUGGAUCACUUCGCACUGCCCCUGCUCACUUGUCCGUCAGAUAUUUUUCUGCUUCGAUUUCUCGUCGUUAACUGGCUUGCUUAAUUUGUUGCUUUUUUGAUAAACUUAUUUCUCAGGCGAUUGACAGUUUGUUUGUCAUCAGUUAGCUCCGGUGUUUUGCAUGAAGUUUAAAUCUUUGGUGUUGUGAGGAAAUUUGAUUUCUUUGAUUCGCAGGGCUUGACUCUUAGGACUGCUUACUGUAACUCAAAGCUCGCGGGCUUUUGCAUCUUGUAAUGUAUCUCAAUGUAUUUUGCACUAAUAAAAUGUACUUGUUAUUGAAUUCUGUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.58%
ME_num:
MEP:
42.68%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
12.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.14557613021872 | 0.000860832872338646 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.31037277130568 | 0.0427361309478332 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.24914739016649 | 5.2923741445595e-08 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.12529717125106 | 0.0259015414791061 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.88340759843729 | 3.73502061345171e-11 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.90439395300032 | 4.47905263150558e-10 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -3.06128214473921 | 2.47893729025862e-11 |
| 8 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -6.09547384873817 | 3.33222890522523e-08 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.12488479598338 | 0.000225605122120896 |
| 10 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -2.79921655913857 | 0.0368441860674905 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.35327954318516 | 1.90913450703405e-06 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.7493416236002 | 1.44704159121305e-10 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.09267576325737 | 3.48733230900473e-06 |