Chr:
Chr5
Start:
1009973
End:
1012939
Strand:
+
Ref_name:
LOC4337640
Sequence
(XM_015783331.2):
CAGCUGCUCAAGAUUGCUCGUUGGUGUGGGAGAAGAUCCAUAAUGUUGUUGGGUAUUGAUGAAAGUUCGUUGGUGUGGGAGAAGAUCCAUAAUGUUGUUGGGUAUUGAUGAAAGUAAGUAAAUAUACAUGUAGGAUUGUUCUGUUCUUAUGCGUCGUCCUAUAAACAUGAUUUAAAUUUGAUAACUAAGAACACACUUGCACAUAUUUGUAUUGAUGCUAAACUUUUAUAGUCAAAUGAGAGAUCUAACAAACUUCCAUCUUCAAAUUCGGUGAACUCCAACAUCUCAAAUGCUAAAAAAAAACAUAAUUAACCAAGCUAUGAGAAUGCAUAAAAGUCAGAAUUUAUAUUACUGUGCGAAUACUGUUUCCAUUUCAAACAUACGCUAAGUGUGAGCUUGUCAUACAAAUCAAAUGUAACAACCAAGAAAUAAACCCUCGAUUGUUGCAUGUGUAUACCUUAUAGUGAAAAGUGUUUUCGGUUAACUUUGAUUCACAUUCCAACUCAUCCAUUUUCUAAAUUAUAAAAAUCUAUUUCUUUUAUAAAAAAAAUUGUCCAAUUCAUCGGUCUCAUGCCAUCCCGUUUGCCGGGACUGACAUCCUGACCCCACCAAUCAGAGCAUUUCCCGCGCAAUACACACCCACCAAAACAAAAAGGGCGCGGGAAAUCGAAACAGCGCAAAGGGAAGGGUAGAGAGAGGAAAUCCCACAGCUCCGAAUCUCCGAUCCAUGGAUGCGGCGAUGGAGGACGCGGCGGCCCAAUCCGAGAGGGAAUGGGACGGCGGCGGCGGCGGCGGCGGCGCCGACGCGGUGCUGGGCCUCGCCGGCGCCGGCGCCUCGUUGUCGCUGUGCUACCACGAGGCGUUUGGUCCUCACGAUGAGCUCAUCCUCCUCGAGGCCGCCGACGACCUCCUCCCCGAUCUCCUACAAGGCCGGGUGACUGUGAGGGGACGCCCUGAAGAAGAAGCUGUUCUCUGCACACCCUCUGCAACAUAUGCCAUGAAGUUUGUGGGCAACUCCAAUUCUGUAUUUCUGAUACCUCCUGGUGAAUCAGCUGCUCCAACCUUAAGACCCAAUGGCGCCGAUGGUGAUGAUAAUGUUGCCAGUGCCACUGAUGCUGUAGCUUCUAUCAUCAAAGUGGCAUCAGGUAACAUUGAAUUGGUCCGGACAGCUCCACGGCUUGAUAAACUUCGGAAACUUCUCAAUGAGAGACCCUAUGUGCUUGAUGAAGAUCUUGGCAGUGAUUUGCAACAAAAGGGGCUCUACACAUGGCAGGACCUUUGUGAACUUGUUCAGGCCAGUGACGGUGAGCUGACAGAACAACUGAGUUCCAUAUCAGCUGUUGAGAUUGAUGGGUUCUGGAGGAUGGUCGAUGACAGUUCUGCGAACACGAUUCUGGACAUGAUCCUUCACAAUUCCGUUUUGCAUGACUGGUCACUAAAUUCAAUGCCUGAAAAUGAUGUGCUAGAUGUCAUGGAAUCUGAUGGUUUUAUGCGCAAGAUUGUAACCCAUUGCCUCAACAGAUUUGGAACAAAGGUUGACAAGGAAGCAAGAGGUUGCUGGAGCCUUGAUGAGAGGAGGGUGUGCUUGCAGUUUGCUCGGAGAGCGCUUGGUGCAGGGAAGAUGAAGCUUGAGAACUUCAUGGGUAAAUGGGAGAGAAGCAUUCCUUCAGGAAUGCGCGCUGAUCUUCAGAUGCUUGAAGGGGAAGUGCUGUGUGAAAAGCUUGGCGCGGAGACCUGGGUGCAUGCUUUCAGUGUUGCUGAUCUGCCAUUGGCACCAGCUGAUAGGUUUGCUGCACUAUUCCAAGAGCGGCCAAAGUGGGAAUGGAAAGACCUGCAGCCUUACAUCAGGGAUCUGCGUGUACCUGGUGUCUCUUCUGAAGGACUGCUUAUCAAGUACACCAGAAAAACGCAACCAAGCGCAGAUGCAGAGCCUAUUUUUACUGCAAGAUAAUCAAUCCUGCGUGCUAAAAGCCAUGUUUCGAUGCUGGGCCCUUCCUGGUGGUGAUGCUACUGAAUAUCUGAAACAUGGUUUUGAUCUGAAUAUUGUUUUUUUUUUGUGGGGAUUGAUCUGAAUAUUGUUGACACCCCAAGAUUUGCUGUGGUUUAGUUUUAAGGCAUGCUCGGUGGCACUACAUAUCUUGUUACAUACAGAUUGUCAUACUGAUCGUCUUGCAGACAAAUAUCUUACCUGAAUCUAUUUCUUAGUUUUGAUUGGAGAUGCUGUAUCUGAUCAUGCACGUCAGUCAUUUGUUCAGUUUGACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.42%
ME_num:
MEP:
48.37%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.76
Avg Expression:
5.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.37591130199471 | 6.29420808229928e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.50668025598752 | 0.0050639439486838 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.4961627918361 | 0.0156921495558531 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.95231859314957 | 0.000511772864983883 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.20611774712689 | 3.99753152136616e-30 |
| 6 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | -1.05293467517801 | 0.0185679369223502 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | -1.28399028001006 | 5.0360829167062e-05 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.01988074144637 | 0.000129068805612353 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.2952132527153 | 0.00823684135432113 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.99718951583258 | 3.55671580217251e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.77146027266846 | 0.000455883872946539 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.14240201312889 | 0.0175971935966007 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.99391425872714 | 0.0477134223498257 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.8989832003219 | 2.15842482685162e-22 |
| 15 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.81882313802268 | 0.00220221501481801 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.80362754323974 | 3.13505826693083e-25 |