Chr:
Chr5
Start:
605765
End:
606765
Strand:
+
Ref_name:
LOC4337596
Sequence
(XM_015783240.1):
UGGACCCUGGAUCGAUCACCUCCAUUCUUUCUCCGCAUCUCGCCACAGUACGCUUCGCUGCUCUCCCGCCUAUAUAUACCACCUCCUCCUCGAUCAUCAGUUCAUCAGCAACCAAAGCAAGAAGCAAUUCUUGAGCUCAAUCAGCAACAACAUCUAUCUCCUUCUUGCUUAGUUAAGUCCUUCGCCCUCCCAAGAAGAAGAAGAUGUCUUGCUGCGGCGGCAACUGCGGCUGCGGCAGCGGCUGCCAGUGCGGCGGCGGCUGCGGCGGAUGCAAGAUGUUCCCUGAUGUGGAGGCCACAGCCACCACCAAGACCUUCGUCCUCGCUGCUCCAUCCAACAAGGCGAGCUCUGGAGGAAUGGAGAUGGCGGUGGAGAGCGGCGAGAACGGCGGCUGCGGCUGCAACACCUGCAAGUGUGGCACCAGCUGCAGCGGCUGCUCCUGCUGCUCCUGCAACUGAAUCUAUCGUCGUCGUCGCCCGGCUGCAUGAGGAUUUAUCGUAUGGAUGCUGCUACUGUCGAUCAGAGCUUUGAUCGAGGCCUUAAUUUGCUUGCAUUAGUACCCAGCUUAUAUGUAGGCAGGCCUUGCCUUUUGCUCUGACGCCUAAAUAAAACCGUCGUCGUCGUUGUCAGUGUGUGCGUGUGUCGAUCAAUGUUGGAUGGAUCCCUAGCUAGCUUGGAUGGAUCAUCUAUCAUCAUGGUGAUCUCAUCAUGUACUCCUGCUCCAUCUCCUCAUGCGUGCCAGGCUUCUUAAUAUAAUCUACCUCUGCUUUCAUCCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.44%
ME_num:
MEP:
9.55%
HE_num:
HEP:
87.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.88
Avg Expression:
19935.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.00847168799979 | 1.61507308719957e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.86513069132947 | 2.7238975973821e-24 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.00802287416157 | 3.01612914708287e-26 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.28153354962212 | 4.4040605927975e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.98974684819256 | 8.85905579349531e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.49842015145877 | 3.37881940502446e-19 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.48315265014665 | 2.49099269835252e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.70024666272441 | 0.000213136299340242 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.35308584629662 | 1.96756091140835e-19 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.04091415661871 | 2.75383119616626e-05 |
| 11 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.4101793215289 | 0.000106805886760667 |
| 12 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -4.20650940095088 | 0.00260802037956933 |
| 13 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.21537154512922 | 6.39345969836433e-10 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.16168381621057 | 5.27327202262199e-11 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.0279899975491 | 0.0300718280519415 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -3.68753438424507 | 0.00335598395473234 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.18035463774278 | 0.0157378139700257 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -3.03929316450957 | 0.000674769718252549 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.18042958111061 | 0.0154644069207719 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.18045710410098 | 0.0157587563690304 |
| 21 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.99951774844479 | 0.000272250506099323 |
| 22 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.17338281698398 | 4.88055907715769e-30 |
| 23 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.26221634744309 | 4.03561767049321e-07 |
| 24 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -3.80513992804853 | 2.9613922166559e-09 |
| 25 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.43814258945458 | 7.58328142954758e-06 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.5279774568323 | 2.3872263431595e-09 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.39778773957214 | 4.32024387031732e-12 |